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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum, cytosol, plasma membrane

Predictor Summary:
  • nucleus 1
  • extracellular 2
  • endoplasmic reticulum 3
  • vacuole 2
  • plasma membrane 3
  • golgi 2
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, endoplasmic reticulum, plasma membrane
Any Predictor:cytosol, endoplasmic reticulum, nucleus
BaCelLo:nucleus
iPSORT:secretory
MultiLoc:endoplasmic reticulum
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY52180 Canola cytosol 9.45 52.47
CDX92200 Canola extracellular 15.68 43.38
CDX95784 Canola cytosol 15.68 43.38
KRH41792 Soybean nucleus 15.57 43.08
KRH60497 Soybean endoplasmic reticulum, nucleus 15.57 43.08
CDY18497 Canola cytosol 15.57 42.94
CDY64888 Canola cytosol 14.24 42.81
CDX95554 Canola cytosol 15.46 42.64
CDX93686 Canola cytosol 14.13 42.62
CDX86074 Canola cytosol 14.13 42.62
CDY44104 Canola cytosol 14.13 42.62
VIT_17s0000g02750.t01 Wine grape cytosol, plastid 15.46 42.51
CDX83869 Canola cytosol 11.57 41.6
Solyc03g119040.2.1 Tomato nucleus 15.02 41.41
PGSC0003DMT400014419 Potato cytosol 15.02 41.28
CDX96736 Canola cytosol 11.46 41.2
CDX81860 Canola cytosol 11.46 41.2
CDY21720 Canola cytosol 11.35 40.8
CDY26186 Canola cytosol 11.35 40.8
Solyc06g069010.2.1 Tomato nucleus 14.79 40.8
PGSC0003DMT400074094 Potato cytosol 14.79 40.8
Solyc12g040510.1.1 Tomato cytosol 14.91 40.73
PGSC0003DMT400040923 Potato cytosol 14.79 40.43
CDY60778 Canola cytosol, plastid 11.23 40.4
Zm00001d009480_P001 Maize plasma membrane, plastid 14.79 39.82
TraesCS1B01G398800.1 Wheat plastid 14.79 39.7
TraesCS1A01G378000.1 Wheat cytosol, golgi, nucleus, unclear 14.79 39.7
Os01t0686800-02 Rice cytosol 14.68 39.52
Zm00001d038923_P001 Maize plastid 14.68 39.52
TraesCS1D01G385000.1 Wheat cytosol 14.68 39.4
TraesCS3A01G263900.1 Wheat nucleus 14.46 39.16
HORVU3Hr1G063670.2 Barley cytosol 14.46 39.16
TraesCS3B01G297300.1 Wheat nucleus 14.46 39.16
TraesCS3D01G264000.1 Wheat cytosol 14.46 39.16
EES18632 Sorghum cytosol 14.46 38.92
Os05t0552300-02 Rice cytosol 14.24 38.1
EES01286 Sorghum cytosol 14.02 37.95
HORVU1Hr1G083710.1 Barley cytosol 14.24 36.47
GSMUA_Achr2P14580_001 Banana cytosol 12.35 35.58
CDY59680 Canola cytosol 7.9 31.56
CDY71917 Canola cytosol 8.23 30.33
PGSC0003DMT400041253 Potato cytosol 1.45 15.29
CDX77299 Canola plastid 1.56 14.43
CDX77303 Canola cytosol 4.67 13.59
CDY39169 Canola cytosol, nucleus, plastid 5.23 12.63
CDY45049 Canola endoplasmic reticulum, mitochondrion, nucleus, plastid 2.56 11.79
CDY62001 Canola nucleus 6.34 11.75
CDY21330 Canola nucleus 6.23 11.57
CDY28878 Canola nucleus 3.78 11.26
Protein Annotations
KEGG:00010+2.7.1.11KEGG:00030+2.7.1.11KEGG:00051+2.7.1.11KEGG:00052+2.7.1.11KEGG:00680+2.7.1.11Gene3D:1.10.10.480
Gene3D:1.25.10.10MapMan:17.1.3.1.33Gene3D:2.130.10.10Gene3D:3.40.50.460GO:A0A078I890UniProt:A0A078I890
InterPro:AB_hydrolaseInterPro:ARM-likeInterPro:ARM-type_foldEnsemblPlants:CDY46056ProteinID:CDY46056ProteinID:CDY46056.1
InterPro:Clathrin/coatomer_adapt-like_NInterPro:Dienelactn_hydroGO:GO:0003674GO:GO:0003824GO:GO:0003872GO:GO:0005488
GO:GO:0005515GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005975
GO:GO:0006091GO:GO:0006096GO:GO:0006139GO:GO:0006810GO:GO:0006886GO:GO:0008150
GO:GO:0008152GO:GO:0009056GO:GO:0009058GO:GO:0009987GO:GO:0015031GO:GO:0016020
GO:GO:0016192GO:GO:0016301GO:GO:0016740GO:GO:0016787GO:GO:0030117GO:GO:0061615
EnsemblPlantsGene:GSBRNA2T00083201001InterPro:IPR001680InterPro:IPR011989InterPro:IPR015943InterPro:IPR017986InterPro:IPR029058
PFAM:PF00400PFAM:PF01602PFAM:PF01738InterPro:PKF_sfScanProsite:PS00678PFscan:PS50082
PFscan:PS50294PANTHER:PTHR19868PANTHER:PTHR19868:SF3MetaCyc:PWY-1042MetaCyc:PWY-1861MetaCyc:PWY-5484
MetaCyc:PWY-7385InterPro:Papain_like_cys_pep_sfSMART:SM00320SUPFAM:SSF48371SUPFAM:SSF50978SUPFAM:SSF53474
SUPFAM:SSF53784SUPFAM:SSF54001SignalP:SignalP-noTMUniPathway:UPA00109UniParc:UPI0004EDD143InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeatInterPro:WD40_repeat_CSInterPro:WD40_repeat_domInterPro:WD40_repeat_dom_sfSEG:seg:
Description
BnaC01g35030DBnaC01g35030D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I890]
Coordinates
chrLK032648:-:168716..178710
Molecular Weight (calculated)
99594.5 Da
IEP (calculated)
8.574
GRAVY (calculated)
-0.081
Length
899 amino acids
Sequence
(BLAST)
001: MSHSREIELC TRFLSILLIL ILKENKDKKD AEFNERFKHS ESHSASIHSC LLLATSLARI GTDDLARYLT SEVFTLLGSS KASVRKKSIG VVLRVFDKYH
101: DAVKVCFKRL VENLESSDAQ LLSAVVGVCL GAVIEAIKSK GITAIGVAGM CWGAKMVVEL SKQELVQAAV LLHPSFVTVD DIKGGKVPIA ILGAEIDRLS
201: PPALLKQFEE ILASKPEGKV EFTVLKSFSS SPILSRRTTN PTASPHRPLP LRRRRRPLLR RPIRAFRKLG RRASPWDLAA GVSTRRFVGH TKDVLSVAFS
301: LDNRQIVSAS RDRTIKLWNT LGECKYTISE GGEGHRDWVS CVRFSPNTLQ PTIVSASWGK TVKVWNLSNC KLRSTLAGHT GYASIVAVSP DGSLCASGGK
401: SVVEDLKVDL KADLESKSVG VVEELKVDLK ADLESKSVVE DLKVDLKAEA EKSDGSASNS IHNPHEDSPV KNPSTTVSAQ SVSSSGNMGS PLSRAEKPTT
501: VATTLASDDP ALCQYFVIPL WRGNGYGTMF AQGTEAMFSN LGHFTSVSIR VSGGSMSECC TSVLSLASHP FNICPCWPCL LQIRDAVQAR AGQDKNHGVI
601: LIPEGIVESI HELYALLKEG VHADNISTQL SPWSSTLFEF LPPFIKKQLA FAFLVYPCLV VQYMGQSAFL SKNLGLFPTI FTVQSQDSWA KIIEWSSTSN
701: ELKIGPSMLT SELAARIMGP TEWLLNHEID AMMYLFTEMT TLRRWEPSKV AFMSCMFSNQ MKTSFEEFRK DKKKFKVLEL LHRYDIGELP AHGRTRLMWD
801: LDVTCIRQQL KVKQYTVSYA PMPYLLNKSN SDCGVYALKH IECHLLGLDF SLVNDNNIRE ARQKIAYDLW EAANDPEIIL RMAQYTPPKM IINPLVELD
Best Arabidopsis Sequence Match ( AT1G18080.1 )
(BLAST)
001: MAEGLVLKGT MRAHTDMVTA IATPIDNADI IVSASRDKSI ILWKLTKDDK AYGVAQRRLT GHSHFVEDVV LSSDGQFALS GSWDGELRLW DLAAGVSTRR
101: FVGHTKDVLS VAFSLDNRQI VSASRDRTIK LWNTLGECKY TISEGGEGHR DWVSCVRFSP NTLQPTIVSA SWDKTVKVWN LSNCKLRSTL AGHTGYVSTV
201: AVSPDGSLCA SGGKDGVVLL WDLAEGKKLY SLEANSVIHA LCFSPNRYWL CAATEHGIKI WDLESKSIVE DLKVDLKAEA EKADNSGPAA TKRKVIYCTS
301: LNWSADGSTL FSGYTDGVIR VWGIGRY
Arabidopsis Description
RACK1ARACK1A_AT [Source:UniProtKB/TrEMBL;Acc:A0A178WHX3]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.