Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX96736 | Canola | cytosol | 98.8 | 98.8 |
| CDX81860 | Canola | cytosol | 97.2 | 97.2 |
| CDY26186 | Canola | cytosol | 97.2 | 97.2 |
| CDY60778 | Canola | cytosol, plastid | 96.4 | 96.4 |
| CDY21720 | Canola | cytosol | 96.0 | 96.0 |
| CDY52180 | Canola | cytosol | 51.6 | 79.63 |
| PGSC0003DMT400041253 | Potato | cytosol | 26.0 | 76.47 |
| CDY59680 | Canola | cytosol | 67.2 | 74.67 |
| CDY71917 | Canola | cytosol | 72.8 | 74.59 |
| AT1G18080.1 | Thale cress | cytosol | 95.6 | 73.09 |
| CDX95554 | Canola | cytosol | 90.8 | 69.63 |
| CDY18497 | Canola | cytosol | 90.8 | 69.63 |
| CDX95784 | Canola | cytosol | 90.4 | 69.54 |
| CDX92200 | Canola | extracellular | 90.4 | 69.54 |
| KRH60497 | Soybean | endoplasmic reticulum, nucleus | 88.0 | 67.69 |
| KRH41792 | Soybean | nucleus | 87.2 | 67.08 |
| VIT_17s0000g02750.t01 | Wine grape | cytosol, plastid | 87.6 | 66.97 |
| CDY64888 | Canola | cytosol | 77.6 | 64.88 |
| CDX93686 | Canola | cytosol | 76.8 | 64.43 |
| CDX86074 | Canola | cytosol | 76.8 | 64.43 |
| CDY44104 | Canola | cytosol | 76.8 | 64.43 |
| PGSC0003DMT400074094 | Potato | cytosol | 81.2 | 62.27 |
| Solyc03g119040.2.1 | Tomato | nucleus | 80.8 | 61.96 |
| Solyc06g069010.2.1 | Tomato | nucleus | 80.4 | 61.66 |
| PGSC0003DMT400014419 | Potato | cytosol | 80.0 | 61.16 |
| Solyc12g040510.1.1 | Tomato | cytosol | 79.2 | 60.18 |
| PGSC0003DMT400040923 | Potato | cytosol | 78.8 | 59.88 |
| Zm00001d038923_P001 | Maize | plastid | 71.2 | 53.29 |
| Zm00001d009480_P001 | Maize | plasma membrane, plastid | 70.8 | 52.99 |
| Os01t0686800-02 | Rice | cytosol | 70.8 | 52.99 |
| TraesCS1B01G398800.1 | Wheat | plastid | 70.8 | 52.84 |
| TraesCS3B01G297300.1 | Wheat | nucleus | 70.0 | 52.71 |
| HORVU3Hr1G063670.2 | Barley | cytosol | 70.0 | 52.71 |
| TraesCS3D01G264000.1 | Wheat | cytosol | 70.0 | 52.71 |
| EES18632 | Sorghum | cytosol | 70.4 | 52.69 |
| TraesCS1A01G378000.1 | Wheat | cytosol, golgi, nucleus, unclear | 70.4 | 52.54 |
| TraesCS3A01G263900.1 | Wheat | nucleus | 69.6 | 52.41 |
| EES01286 | Sorghum | cytosol | 69.2 | 52.11 |
| Os05t0552300-02 | Rice | cytosol | 69.6 | 51.79 |
| TraesCS1D01G385000.1 | Wheat | cytosol | 69.2 | 51.64 |
| HORVU1Hr1G083710.1 | Barley | cytosol | 64.8 | 46.15 |
| GSMUA_Achr2P14580_001 | Banana | cytosol | 56.4 | 45.19 |
| CDX77303 | Canola | cytosol | 31.6 | 25.57 |
| CDX77299 | Canola | plastid | 6.4 | 16.49 |
| CDY28878 | Canola | nucleus | 14.0 | 11.59 |
| CDY46056 | Canola | cytosol, endoplasmic reticulum, plasma membrane | 41.6 | 11.57 |
| CDY39169 | Canola | cytosol, nucleus, plastid | 16.4 | 11.02 |
| CDY21330 | Canola | nucleus | 16.0 | 8.26 |
| CDY62001 | Canola | nucleus | 16.0 | 8.25 |
| CDY45049 | Canola | endoplasmic reticulum, mitochondrion, nucleus, plastid | 5.2 | 6.67 |
Protein Annotations
| MapMan:17.1.3.1.33 | Gene3D:2.130.10.10 | EnsemblPlants:CDX83869 | ProteinID:CDX83869 | ProteinID:CDX83869.1 | InterPro:G-protein_beta_WD-40_rep |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | EnsemblPlantsGene:GSBRNA2T00139633001 | InterPro:IPR001680 | InterPro:IPR015943 |
| InterPro:IPR017986 | PFAM:PF00400 | PRINTS:PR00320 | ScanProsite:PS00678 | PFscan:PS50082 | PFscan:PS50294 |
| PANTHER:PTHR19868 | PANTHER:PTHR19868:SF3 | SMART:SM00320 | SUPFAM:SSF50978 | UniParc:UPI0004EDD563 | InterPro:WD40/YVTN_repeat-like_dom_sf |
| InterPro:WD40_repeat | InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | : | : |
Description
BnaC08g17760D
Coordinates
chrLK031834:-:900196..901832
Molecular Weight (calculated)
26963.8 Da
IEP (calculated)
6.676
GRAVY (calculated)
-0.112
Length
250 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEGLVLKGT MRAHTDQVTA IATPIDNSDI IVSASRDKSI ILWKLTKDDK SYGVAQRRLT GHSHFVEDVV LSSDGQFALS GSWDGELRLW DLAAGVSTRR
101: FVGHTKDVLS VAFSLDNRQI VSASRDRTIK LWNTLGESTL AGHTGYVSTV AVSPDGSLCA SGGKDGVVLL YWLCAATEQG IKIWDLESKS VVEDLKVDLK
201: AEAEKSDGSG TAGNKKKVIY CTSLNWSADG STLFSGYTDG VIRVWGIGRY
101: FVGHTKDVLS VAFSLDNRQI VSASRDRTIK LWNTLGESTL AGHTGYVSTV AVSPDGSLCA SGGKDGVVLL YWLCAATEQG IKIWDLESKS VVEDLKVDLK
201: AEAEKSDGSG TAGNKKKVIY CTSLNWSADG STLFSGYTDG VIRVWGIGRY
001: MAEGLVLKGT MRAHTDMVTA IATPIDNADI IVSASRDKSI ILWKLTKDDK AYGVAQRRLT GHSHFVEDVV LSSDGQFALS GSWDGELRLW DLAAGVSTRR
101: FVGHTKDVLS VAFSLDNRQI VSASRDRTIK LWNTLGECKY TISEGGEGHR DWVSCVRFSP NTLQPTIVSA SWDKTVKVWN LSNCKLRSTL AGHTGYVSTV
201: AVSPDGSLCA SGGKDGVVLL WDLAEGKKLY SLEANSVIHA LCFSPNRYWL CAATEHGIKI WDLESKSIVE DLKVDLKAEA EKADNSGPAA TKRKVIYCTS
301: LNWSADGSTL FSGYTDGVIR VWGIGRY
101: FVGHTKDVLS VAFSLDNRQI VSASRDRTIK LWNTLGECKY TISEGGEGHR DWVSCVRFSP NTLQPTIVSA SWDKTVKVWN LSNCKLRSTL AGHTGYVSTV
201: AVSPDGSLCA SGGKDGVVLL WDLAEGKKLY SLEANSVIHA LCFSPNRYWL CAATEHGIKI WDLESKSIVE DLKVDLKAEA EKADNSGPAA TKRKVIYCTS
301: LNWSADGSTL FSGYTDGVIR VWGIGRY
Arabidopsis Description
RACK1ARACK1A_AT [Source:UniProtKB/TrEMBL;Acc:A0A178WHX3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.