CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

extracellular: 28052459

msms PMID: 28052459 doi

A Ostendorp, S Pahlow, L Krüßel, P Hanhart, MY Garbe, J Deke, P Giavalisco, J Kehr

Max Planck Institute of Molecular Plant Physiology, am Mühlenberg 1, Potsdam, 14476, Germany., Molecular Plant Genetics, University Hamburg, Biocenter Klein Flottbek, Ohnhorststr. 18, Hamburg, 22609, Germany.

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX69142
CDX72539
CDX75505
CDY40632

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G18130.1	CDX69142	AT4G35470.1	21798944
AT3G18130.1	CDX72539	AT4G35470.1	21798944
AT3G18130.1	CDX75505	AT4G35470.1	21798944
AT3G18130.1	CDY40632	AT4G35470.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra022282.1-P	Field mustard	cytosol	99.69	99.69
CDX95784	Canola	cytosol	99.69	99.69
CDY18497	Canola	cytosol	98.46	98.16
CDX95554	Canola	cytosol	98.15	97.85
AT3G18130.1	Thale cress	cytosol	92.92	92.64
CDX83869	Canola	cytosol	69.54	90.4
CDX96736	Canola	cytosol	69.23	90.0
CDX81860	Canola	cytosol	68.62	89.2
CDY26186	Canola	cytosol	68.62	89.2
CDY59680	Canola	cytosol	61.54	88.89
CDY60778	Canola	cytosol, plastid	68.31	88.8
CDY71917	Canola	cytosol	66.46	88.52
CDY21720	Canola	cytosol	67.69	88.0
CDY64888	Canola	cytosol	80.0	86.96
CDX93686	Canola	cytosol	78.77	85.91
CDY44104	Canola	cytosol	78.77	85.91
CDX86074	Canola	cytosol	78.77	85.91
KRH60497	Soybean	endoplasmic reticulum, nucleus	84.92	84.92
VIT_17s0000g02750.t01	Wine grape	cytosol, plastid	84.92	84.4
KRH41792	Soybean	nucleus	84.31	84.31
PGSC0003DMT400074094	Potato	cytosol	81.85	81.6
Solyc03g119040.2.1	Tomato	nucleus	81.54	81.29
Solyc06g069010.2.1	Tomato	nucleus	81.23	80.98
PGSC0003DMT400014419	Potato	cytosol	81.23	80.73
PGSC0003DMT400041253	Potato	cytosol	20.62	78.82
Solyc12g040510.1.1	Tomato	cytosol	79.38	78.42
PGSC0003DMT400040923	Potato	cytosol	79.38	78.42
CDY52180	Canola	cytosol	36.62	73.46
Zm00001d038923_P001	Maize	plastid	72.92	70.96
Os01t0686800-02	Rice	cytosol	72.92	70.96
Zm00001d009480_P001	Maize	plasma membrane, plastid	72.62	70.66
EES18632	Sorghum	cytosol	71.69	69.76
TraesCS1B01G398800.1	Wheat	plastid	71.69	69.55
TraesCS1A01G378000.1	Wheat	cytosol, golgi, nucleus, unclear	71.38	69.25
HORVU3Hr1G063670.2	Barley	cytosol	70.15	68.67
TraesCS3D01G264000.1	Wheat	cytosol	70.15	68.67
TraesCS3B01G297300.1	Wheat	nucleus	70.15	68.67
TraesCS1D01G385000.1	Wheat	cytosol	70.77	68.66
Os05t0552300-02	Rice	cytosol	70.77	68.45
EES01286	Sorghum	cytosol	69.85	68.37
TraesCS3A01G263900.1	Wheat	nucleus	69.85	68.37
HORVU1Hr1G083710.1	Barley	cytosol	67.69	62.68
GSMUA_Achr2P14580_001	Banana	cytosol	56.31	58.65
CDX77303	Canola	cytosol	31.38	33.01
CDX77299	Canola	plastid	6.15	20.62
CDY46056	Canola	cytosol, endoplasmic reticulum, plasma membrane	43.38	15.68
CDY28878	Canola	nucleus	13.23	14.24
CDY39169	Canola	cytosol, nucleus, plastid	15.69	13.71
CDY45049	Canola	endoplasmic reticulum, mitochondrion, nucleus, plastid	7.69	12.82
CDY21330	Canola	nucleus	15.38	10.33
CDY62001	Canola	nucleus	15.38	10.31

Protein Annotations

MapMan:17.1.3.1.33	Gene3D:2.130.10.10	EnsemblPlants:CDX92200	ProteinID:CDX92200	ProteinID:CDX92200.1	InterPro:G-protein_beta_WD-40_rep
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005840	GO:GO:0030529	EnsemblPlantsGene:GSBRNA2T00153908001	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	PFAM:PF00400	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR19868	PANTHER:PTHR19868:SF3	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0004EB3A65	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	:	:

Description

BnaA05g22070D

Coordinates

chrLK031871:-:753969..755365

Molecular Weight (calculated)

35510.0 Da

IEP (calculated)

7.468

GRAVY (calculated)

-0.168

Length

325 amino acids

Sequence
(BLAST)

001: MAEGLVLKGT MRAHTDMVTA IATPIDNSDI IVTSSRDKSI ILWKLTKDDK SYGVAQRRLT GHSHFVEDVV LSSDGQFALS GSWDGELRLW DLATGVSTRR
101: FVGHTKDVLS VAFSVDNRQI VSASRDRTIK LWNTLGECKY TISEADGHKD WISCVRFSPN TLVPTIVSAS WDKTVKVWNL QNCKLKSSLA GHSGYLNTVA
201: VSPDGSLCAS GGKDGVILLW DLAEGKKLYS LEGGSIIHSL CFSPNRYWLC AATESSIKIW DLESKTVVDE LKVDLKAEAE KDGGAGTGNQ KKVNYCTSLN
301: WSADGSTLFS GYTDGVVRVW GIGRY

Best Arabidopsis Sequence Match ( AT3G18130.1 )
(BLAST)

001: MAEGLVLKGI MRAHTDIVTA IATPIDNSDI IVTASRDKSI ILWKLTKDDK SYGVAQRRLT GHSHFVEDVV LSSDGQFALS GSWDGELRLW DLATGETTRR
101: FVGHTKDVLS VAFSTDNRQI VSASRDRTIK LWNTLGECKY TISEGDGHKE WVSCVRFSPN TLVPTIVSAS WDKTVKVWNL QNCKLRNSLV GHSGYLNTVA
201: VSPDGSLCAS GGKDGVILLW DLAEGKKLYS LEAGSIIHSL CFSPNRYWLC AATENSIRIW DLESKSVVED LKVDLKSEAE KNEGGVGTGN QKKVIYCTSL
301: NWSADGSTLF SGYTDGVVRV WGIGRY

Arabidopsis Description

RACK1CReceptor for activated C kinase 1C [Source:UniProtKB/Swiss-Prot;Acc:Q9LV28]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.