CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY22349
CDY60899

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G35470.1	CDY22349	AT5G43400.1	21798944
AT4G35470.1	CDY60899	AT5G43400.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra017712.1-P	Field mustard	nucleus	99.82	99.82
CDX72539	Canola	nucleus	68.07	94.4
CDX75505	Canola	cytosol	84.22	85.0
CDX69142	Canola	cytosol	84.77	84.93
AT4G35470.1	Thale cress	nucleus	83.67	83.06
CDY66405	Canola	cytosol	62.94	68.6
CDY07843	Canola	nucleus	62.39	68.0
CDY30364	Canola	cytosol	62.2	66.34
CDY26809	Canola	nucleus	64.95	66.29
KRH28950	Soybean	cytosol	65.32	62.79
KRH76512	Soybean	nucleus	66.06	62.72
KRH39397	Soybean	nucleus	63.12	62.43
KRH07815	Soybean	cytosol	62.39	62.04
VIT_07s0031g02310.t01	Wine grape	cytosol	63.12	61.76
GSMUA_Achr5P23850_001	Banana	cytosol	60.0	59.35
GSMUA_Achr8P25490_001	Banana	nucleus	59.45	58.59
PGSC0003DMT400059678	Potato	nucleus	60.0	57.47
PGSC0003DMT400035497	Potato	cytosol	59.82	56.99
Solyc02g082350.2.1	Tomato	nucleus	59.45	56.15
EES14257	Sorghum	nucleus	55.6	52.42
TraesCS7B01G143600.3	Wheat	nucleus	54.31	52.2
TraesCS7D01G246700.1	Wheat	nucleus	53.76	51.4
TraesCS7A01G247900.2	Wheat	cytosol	53.76	51.4
Zm00001d031470_P001	Maize	plasma membrane	54.31	51.3
Os08t0511700-00	Rice	plasma membrane	53.76	51.05
CDY30187	Canola	nucleus	17.25	33.69
CDX73881	Canola	cytosol	23.3	29.53
CDY00732	Canola	cytosol	23.3	29.53
CDY46713	Canola	nucleus	19.63	29.23
CDY69629	Canola	cytosol	17.25	27.65
CDX82667	Canola	nucleus, plastid	19.45	27.6
CDY39144	Canola	nucleus, plastid	19.45	27.6
CDY16042	Canola	cytosol	23.12	27.21
CDY26604	Canola	cytosol	23.12	27.21
CDX89369	Canola	cytosol, plastid	19.63	26.88
CDY48988	Canola	cytosol	23.3	26.85
CDX70122	Canola	cytosol	23.67	26.71
CDX98871	Canola	cytosol	23.67	26.71
CDX94383	Canola	cytosol	19.45	26.63
CDY42760	Canola	cytosol, plastid	19.27	26.58
CDY01012	Canola	plastid	23.12	26.36
CDX78316	Canola	cytosol, mitochondrion, nucleus	12.66	26.34
CDY14024	Canola	mitochondrion	12.66	26.24
CDY08535	Canola	plastid	23.85	26.16
CDY40770	Canola	cytosol	12.66	26.14
CDX81078	Canola	mitochondrion	12.48	25.95
CDX92748	Canola	cytosol, plasma membrane, plastid	17.8	25.94
GSMUA_Achr6P03430_001	Banana	nucleus	21.28	24.58
CDY29703	Canola	cytosol	13.58	20.39
CDX97851	Canola	cytosol	13.58	20.39
CDX97667	Canola	nucleus	16.7	15.56
CDY56828	Canola	nucleus	16.7	15.56

Protein Annotations

Gene3D:3.80.10.10	MapMan:35.1	UniProt:A0A078HS31	EnsemblPlants:CDY40632	ProteinID:CDY40632	ProteinID:CDY40632.1
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00071486001	InterPro:IPR001611	InterPro:IPR032675
InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_typical-subtyp	PFAM:PF00560	PFAM:PF13516	PFAM:PF13855
PRINTS:PR00019	PFscan:PS51450	PANTHER:PTHR44513	PANTHER:PTHR44513:SF1	SMART:SM00364	SMART:SM00369
SUPFAM:SSF52058	UniParc:UPI0004EE30AB	SEG:seg	:	:	:

Description

BnaA03g53310DBnaA03g53310D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HS31]

Coordinates

chrLK032476:-:66987..69585

Molecular Weight (calculated)

60768.2 Da

IEP (calculated)

6.617

GRAVY (calculated)

-0.302

Length

545 amino acids

Sequence
(BLAST)

001: MDSMQLDKRL DSTEQVVEEI MRLHRSLPPR PGLDDVEAAR SLILNVEQED QAWLEAIANQ RKPSDVPGDL FTVLQEMKKG LVLFRSKEQR REATKLLDLE
101: TVHSSFDEFI QRASHCIASP SSNGSAPSRP PRVPKPPASL YLSEKAPVRP KEMVSRDDSF VTTKAKPSSL YGDALVAHRS PQLLDSTLTT GKFAGNDGDN
201: LSLIKLASLI EVSSKKATKV LNLQNKLTEQ VEWLPDSIGK LSSLTSLDLS ENHIVVLPNT IGKLSSLTKL NLHSNRITHL PESIGELLNL VYLNLSSNQL
301: SSLPSSFSKL SQLEELDLSC NNLPILPESI GSLANLKKLD VETNEIEEFP YSIGGCSSLK EVRADYNKLK ALPEAIGKIT TLEILSVRYN NIRQLPTTMS
401: SLASLKEVDV SFNELESVPE SLCFATTLVK LNVGNNFADM VSLPRSIGNL ELLEELDISN NQIRVLPESF RMLTKLRVFR AHENPLQVPP RDVAEKGPQA
501: VIQYMNDLVE MRNEKSLVVK PKKSWVQMCF FPKSNKRKHN SMEIV

Best Arabidopsis Sequence Match ( AT4G35470.1 )
(BLAST)

001: MDLMQMDKRL DSTEQVVEEI MRIHRSLPAR PGIDEVEAAK GLIDNVEKED QACLEAIARQ RKSSEVPGEL FMVLQEMKKG YVQFRSKEQI REALKLLDLE
101: SVHSLFDDFI QRASNCIASP SSNGSVSSRP PLPPATTTAA RSDSQSSLNF SERAPVRPKD MVSRDDSFVT KSKPSSLYSD GFAAPPRRPQ ILDSTLTTGN
201: DGEKLSLIKL ASLIEVSAKK ATQEINLQNK LTEQLEWLPD SLGKLSSLTS LDLSENHIVV LPNTIGGLSS LTKLDLHSNR IGQLPESIGE LLNLVYLNLG
301: SNQLSSLPSA FSRLVRLEEL DLSCNNLPIL PESIGSLVSL KKLDVETNDI EEIPYSIGGC SSLIELRADY NKLKALPEAI GKITTLEILS VRYNNIRQLP
401: TTMSSLASLK ELDVSFNELE SVPESLCFAT TLVKLNIGNN FADMVSLPRS IGNLEMLEEL DISNNQIRVL PDSFKMLTKL RVFRAQENPL HIPPRDIAEK
501: GPQAVVQYMN DLVETRNAKS LMVKPKKSWV QMCFFSKSNK RKQSSMEIV

Arabidopsis Description

PIRL4Plant intracellular Ras-group-related LRR protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVW8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.