Factsheet for GSMUA_Achr5P23850_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G35470.1	GSMUA_AchrUn_...	AT5G43400.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P25490_001	Banana	nucleus	82.03	81.74
VIT_07s0031g02310.t01	Wine grape	cytosol	68.6	67.86
KRH76512	Soybean	nucleus	68.97	66.2
KRH28950	Soybean	cytosol	67.51	65.61
KRH39397	Soybean	nucleus	65.52	65.52
KRH07815	Soybean	cytosol	64.97	65.33
CDX72539	Canola	nucleus	45.37	63.61
AT4G35470.1	Thale cress	nucleus	62.79	63.02
PGSC0003DMT400059678	Potato	nucleus	64.79	62.74
CDY66405	Canola	cytosol	56.44	62.2
Bra024514.1-P	Field mustard	cytosol	56.26	62.0
CDY07843	Canola	nucleus	56.08	61.8
AT2G17440.1	Thale cress	cytosol	58.26	61.03
PGSC0003DMT400035497	Potato	cytosol	62.61	60.31
CDX75505	Canola	cytosol	58.98	60.19
CDY40632	Canola	nucleus	59.35	60.0
Bra017712.1-P	Field mustard	nucleus	59.35	60.0
Solyc02g082350.2.1	Tomato	nucleus	62.79	59.97
Bra037271.1-P	Field mustard	cytosol	55.9	59.81
CDX69142	Canola	cytosol	58.62	59.38
CDY30364	Canola	cytosol	54.99	59.3
Zm00001d031470_P001	Maize	plasma membrane	61.34	58.58
CDY26809	Canola	nucleus	56.62	58.43
TraesCS7B01G143600.3	Wheat	nucleus	60.07	58.38
Bra011617.1-P	Field mustard	cytosol	48.09	57.99
EES14257	Sorghum	nucleus	60.8	57.96
TraesCS7D01G246700.1	Wheat	nucleus	59.35	57.37
TraesCS7A01G247900.2	Wheat	cytosol	59.17	57.19
Os08t0511700-00	Rice	plasma membrane	57.35	55.05
GSMUA_Achr4P19230_001	Banana	cytosol	50.27	53.17
GSMUA_Achr4P21530_001	Banana	cytosol	50.82	52.73
GSMUA_Achr1P23570_001	Banana	nucleus	19.96	32.07
GSMUA_AchrUn_...	Banana	nucleus	19.6	31.76
GSMUA_Achr4P03280_001	Banana	plastid	8.17	31.47
GSMUA_Achr4P03290_001	Banana	cytosol	7.44	29.93
GSMUA_Achr6P03430_001	Banana	nucleus	24.32	28.39
GSMUA_Achr8P28520_001	Banana	cytosol, nucleus, plastid	25.41	27.94
GSMUA_Achr1P13500_001	Banana	plastid	24.32	27.4
GSMUA_Achr5P07410_001	Banana	cytosol	13.25	19.21
GSMUA_Achr4P04360_001	Banana	cytosol	18.69	17.61

Protein Annotations

Gene3D:3.80.10.10	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSMUA_Achr5G23850_001
EnsemblPlants:GSMUA_Achr5P23850_001	EnsemblPlants:GSMUA_Achr5T23850_001	InterPro:IPR001611	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt
InterPro:Leu-rich_rpt_typical-subtyp	UniProt:M0T160	PFAM:PF13855	PRINTS:PR00019	PFscan:PS51450	PANTHER:PTHR44513
PANTHER:PTHR44513:SF1	SMART:SM00364	SMART:SM00365	SMART:SM00369	SUPFAM:SSF52058	UniParc:UPI0002962BF5
SEG:seg	:	:	:	:	:

Description

Putative Malignant fibrous histiocytoma-amplified sequence 1 [Source:GMGC_GENE;Acc:GSMUA_Achr5G23850_001]

Coordinates

chr5:+:25433621..25436203

Molecular Weight (calculated)

61214.5 Da

IEP (calculated)

5.681

GRAVY (calculated)

-0.253

Length

551 amino acids

Sequence
(BLAST)

001: MGPSLHSVDS VVEEIMRLHR SLPARPGIDE VEAAMALVHN VDKEEQGRID AILNQNKASE VPEELFFVLQ EMQKNLVYYQ SKEQKREALK LLDLENIHVL
101: FDELIQRASG CLPSSSNASS LSVPTPSVTD SKVNSKTPTS YSTSVSSAFY SEKEVGRSTD WVSKDDSFLK KPRSHVDGIS SNTHLSRGLV PNSTTRQEVT
201: SGEESGKLNL IKLASLIEVS AKKGTRDLNL QNKLMDQIDW LPDSIGKLSS LITLDLSENR IVVLPTTMGA LSSLTKLDLH SNRIAQLPDS IGDLHRLLFL
301: DLRGNQLTSL PSTFCKLVHL EELDLSSNQI SSLPDAIGSL VRLKKLNVET NDIEELPHSI GNCVVLAELR ADYNRLKGLP EAVGRLESLE VLSVRYNNIK
401: GLPTTMASLS KLKELDVSFN ELESIPESLC LATSLIKLNI GNNFADLQSL PRSIGNLELL EELDISNNQI RVLPDSFGML SQLRVLRAEE NPLEMPPRHI
501: TEMGAQAVVQ YMAEYIAKRD IKVLPLKSKM SWAQFCFFSR PNKRKHDGSD L

Best Arabidopsis Sequence Match ( AT4G35470.1 )
(BLAST)

001: MDLMQMDKRL DSTEQVVEEI MRIHRSLPAR PGIDEVEAAK GLIDNVEKED QACLEAIARQ RKSSEVPGEL FMVLQEMKKG YVQFRSKEQI REALKLLDLE
101: SVHSLFDDFI QRASNCIASP SSNGSVSSRP PLPPATTTAA RSDSQSSLNF SERAPVRPKD MVSRDDSFVT KSKPSSLYSD GFAAPPRRPQ ILDSTLTTGN
201: DGEKLSLIKL ASLIEVSAKK ATQEINLQNK LTEQLEWLPD SLGKLSSLTS LDLSENHIVV LPNTIGGLSS LTKLDLHSNR IGQLPESIGE LLNLVYLNLG
301: SNQLSSLPSA FSRLVRLEEL DLSCNNLPIL PESIGSLVSL KKLDVETNDI EEIPYSIGGC SSLIELRADY NKLKALPEAI GKITTLEILS VRYNNIRQLP
401: TTMSSLASLK ELDVSFNELE SVPESLCFAT TLVKLNIGNN FADMVSLPRS IGNLEMLEEL DISNNQIRVL PDSFKMLTKL RVFRAQENPL HIPPRDIAEK
501: GPQAVVQYMN DLVETRNAKS LMVKPKKSWV QMCFFSKSNK RKQSSMEIV

Arabidopsis Description

PIRL4Plant intracellular Ras-group-related LRR protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVW8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.