Factsheet for GSMUA_Achr4P03280_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
cytosol 1
extracellular 1
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os03t0212200-01	Rice	plasma membrane	58.74	59.15
VIT_17s0000g06940.t01	Wine grape	cytosol	65.73	36.02
TraesCS4B01G249200.1	Wheat	cytosol, nucleus, plastid	62.94	34.35
AT5G07910.1	Thale cress	cytosol	62.24	33.97
EER95291	Sorghum	cytosol	61.54	33.59
TraesCS4D01G249500.1	Wheat	cytosol, mitochondrion	61.54	33.59
KRH54661	Soybean	cytosol	60.84	33.33
KRH63260	Soybean	cytosol	60.84	33.33
Bra028680.1-P	Field mustard	cytosol	60.84	32.95
CDY40770	Canola	cytosol	60.84	32.95
HORVU4Hr1G068710.2	Barley	cytosol, mitochondrion, nucleus, plastid	60.14	32.82
CDX78316	Canola	cytosol, mitochondrion, nucleus	60.14	32.82
Bra005960.1-P	Field mustard	cytosol, mitochondrion, nucleus	60.14	32.82
CDY14024	Canola	mitochondrion	60.14	32.7
CDX81078	Canola	mitochondrion	59.44	32.44
Solyc03g115410.2.1	Tomato	cytosol	58.04	32.05
Solyc12g040320.1.1	Tomato	mitochondrion	56.64	31.03
PGSC0003DMT400063105	Potato	cytosol	53.15	29.01
Zm00001d028191_P002	Maize	cytosol	62.24	26.81
TraesCS4A01G055400.1	Wheat	nucleus	62.94	26.55
PGSC0003DMT400013776	Potato	cytosol	34.97	22.03
GSMUA_Achr4P19230_001	Banana	cytosol	31.47	8.64
GSMUA_Achr8P25490_001	Banana	nucleus	32.87	8.5
GSMUA_Achr5P23850_001	Banana	cytosol	31.47	8.17
GSMUA_Achr4P21530_001	Banana	cytosol	28.67	7.72
GSMUA_Achr1P23570_001	Banana	nucleus	16.78	7.0
GSMUA_Achr8P28520_001	Banana	cytosol, nucleus, plastid	24.48	6.99
GSMUA_Achr1P13500_001	Banana	plastid	23.78	6.95
GSMUA_AchrUn_...	Banana	nucleus	16.08	6.76
GSMUA_Achr4P04360_001	Banana	cytosol	23.08	5.64
GSMUA_Achr5P07410_001	Banana	cytosol	13.99	5.26
GSMUA_Achr4P03290_001	Banana	cytosol	4.9	5.11
GSMUA_Achr6P03430_001	Banana	nucleus	3.5	1.06

Protein Annotations

Gene3D:3.80.10.10	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSMUA_Achr4G03280_001
EnsemblPlants:GSMUA_Achr4P03280_001	EnsemblPlants:GSMUA_Achr4T03280_001	InterPro:IPR001611	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt
InterPro:Leu-rich_rpt_typical-subtyp	UniProt:M0SKP5	PFAM:PF13855	PFscan:PS51450	PANTHER:PTHR45289	SMART:SM00369
SUPFAM:SSF52058	UniParc:UPI0002969278	:	:	:	:

Description

Putative LRR repeats and ubiquitin-like domain-containing protein At2g30105 [Source:GMGC_GENE;Acc:GSMUA_Achr4G03280_001]

Coordinates

chr4:+:2639300..2641986

Molecular Weight (calculated)

15535.0 Da

IEP (calculated)

8.331

GRAVY (calculated)

0.180

Length

143 amino acids

Sequence
(BLAST)

001: MGCCNSISGG DSSANRIVRW RSTGIVALRD SKLRAIPSEV LVVDSFVRTL DLTNNKINEV TPEISRLVNI QRLVLAGNLI ESLPTTIGVL QSLKVLILDG
101: NRVTNLPDEL GSLYRLEKLS ITGNSLTCLP KNIGDLCNVS FLN

Best Arabidopsis Sequence Match ( AT5G07910.1 )
(BLAST)

001: MGCCASNTAG GSKANRISRW RSTGIVGLRD SKLKTFPDEV IEMERAVRTL DLTHNKIADV PGEISKLINM QRLLIADNLV ERLPGNLGKL QSLKVLMLDG
101: NRISCLPDEL GQLVRLEQLS ISRNMLIYLP DTIGSLRNLL LLNVSNNRLK SLPESVGSCA SLEEVQANDN VVEELPASLC NLIQLKSLSL DNNQVNQIPD
201: GLLIHCKSLQ NLSLHNNPIS MDQFQLMEGY QDFEERRKKK FDKQIDSNVM MGSKALDVGV DK

Arabidopsis Description

Leucine-rich repeat (LRR) family protein [Source:UniProtKB/TrEMBL;Acc:Q8RWI2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.