Factsheet for Solyc03g115410.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 2
extracellular 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400063105	Potato	cytosol	94.59	93.51
Solyc12g040320.1.1	Tomato	mitochondrion	83.01	82.38
VIT_17s0000g06940.t01	Wine grape	cytosol	78.38	77.78
KRH63260	Soybean	cytosol	77.61	77.01
KRH54661	Soybean	cytosol	77.61	77.01
Bra028680.1-P	Field mustard	cytosol	71.43	70.08
CDY40770	Canola	cytosol	71.43	70.08
CDY14024	Canola	mitochondrion	71.04	69.96
AT5G07910.1	Thale cress	cytosol	70.66	69.85
GSMUA_Achr4P03290_001	Banana	cytosol	36.68	69.34
CDX81078	Canola	mitochondrion	69.88	69.08
CDX78316	Canola	cytosol, mitochondrion, nucleus	69.5	68.7
Bra005960.1-P	Field mustard	cytosol, mitochondrion, nucleus	69.5	68.7
EER95291	Sorghum	cytosol	62.16	61.45
TraesCS4B01G249200.1	Wheat	cytosol, nucleus, plastid	61.39	60.69
HORVU4Hr1G068710.2	Barley	cytosol, mitochondrion, nucleus, plastid	60.62	59.92
TraesCS4D01G249500.1	Wheat	cytosol, mitochondrion	60.62	59.92
GSMUA_Achr4P03280_001	Banana	plastid	32.05	58.04
Os03t0212200-01	Rice	plasma membrane	29.34	53.52
Zm00001d028191_P002	Maize	cytosol	62.16	48.49
TraesCS4A01G055400.1	Wheat	nucleus	61.39	46.9
Solyc12g017480.1.1	Tomato	cytosol	20.46	14.56
Solyc08g006970.2.1	Tomato	cytosol	27.8	14.17
Solyc02g082350.2.1	Tomato	nucleus	30.5	13.69
Solyc03g112270.2.1	Tomato	cytosol, nucleus, plastid	25.48	12.55
Solyc10g006930.2.1	Tomato	cytosol	28.19	12.5
Solyc06g007250.2.1	Tomato	cytosol	17.76	12.27

Protein Annotations

EnsemblPlants:Solyc03g115410.2.1	EnsemblPlantsGene:Solyc03g115410.2	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001611	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_typical-subtyp	PANTHER:PTHR45289
PFAM:PF13855	SEG:seg	SMART:SM00364	SMART:SM00369	SUPFAM:SSF52058	UniParc:UPI000276895A
UniProt:K4BL43	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chr3:+:65133863..65139337

Molecular Weight (calculated)

28857.1 Da

IEP (calculated)

5.434

GRAVY (calculated)

-0.177

Length

259 amino acids

Sequence
(BLAST)

001: MGCSSSKTAD AVTISRWRST GIVALRDSKL KTFPDEVFDL EKSVRTLDLT HNKMVEIPME INKLTNLQRL ILANNIIERL PMNLGLLQSL KVATFDGNRI
101: TNLPDELGQL VKLERLSVSA NLLTSLPDTI GSLRSLVLLN VSNNKLKFLP ESIGSCCSLE ELQANDNSIE ELPGSVCNLI QLKSLCLNNN NLNQMPSNLL
201: RECKGLQNIA LHGNPITMDQ FQQMEGFQEF EARRKMKFDK QIDSNVIISS KGLDEGVDL

Best Arabidopsis Sequence Match ( AT5G07910.1 )
(BLAST)

001: MGCCASNTAG GSKANRISRW RSTGIVGLRD SKLKTFPDEV IEMERAVRTL DLTHNKIADV PGEISKLINM QRLLIADNLV ERLPGNLGKL QSLKVLMLDG
101: NRISCLPDEL GQLVRLEQLS ISRNMLIYLP DTIGSLRNLL LLNVSNNRLK SLPESVGSCA SLEEVQANDN VVEELPASLC NLIQLKSLSL DNNQVNQIPD
201: GLLIHCKSLQ NLSLHNNPIS MDQFQLMEGY QDFEERRKKK FDKQIDSNVM MGSKALDVGV DK

Arabidopsis Description

Leucine-rich repeat (LRR) family protein [Source:UniProtKB/TrEMBL;Acc:Q8RWI2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.