Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 3
- cytosol 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY40770 | Canola | cytosol | 91.22 | 90.53 |
| Bra028680.1-P | Field mustard | cytosol | 91.22 | 90.53 |
| CDY14024 | Canola | mitochondrion | 90.84 | 90.49 |
| CDX78316 | Canola | cytosol, mitochondrion, nucleus | 89.69 | 89.69 |
| Bra005960.1-P | Field mustard | cytosol, mitochondrion, nucleus | 89.69 | 89.69 |
| CDX81078 | Canola | mitochondrion | 88.55 | 88.55 |
| KRH54661 | Soybean | cytosol | 74.43 | 74.71 |
| VIT_17s0000g06940.t01 | Wine grape | cytosol | 73.66 | 73.95 |
| KRH63260 | Soybean | cytosol | 72.9 | 73.18 |
| Solyc03g115410.2.1 | Tomato | cytosol | 69.85 | 70.66 |
| Solyc12g040320.1.1 | Tomato | mitochondrion | 68.32 | 68.58 |
| PGSC0003DMT400063105 | Potato | cytosol | 67.56 | 67.56 |
| GSMUA_Achr4P03290_001 | Banana | cytosol | 33.97 | 64.96 |
| PGSC0003DMT400013776 | Potato | cytosol | 54.96 | 63.44 |
| GSMUA_Achr4P03280_001 | Banana | plastid | 33.97 | 62.24 |
| EER95291 | Sorghum | cytosol | 60.31 | 60.31 |
| TraesCS4B01G249200.1 | Wheat | cytosol, nucleus, plastid | 59.92 | 59.92 |
| TraesCS4D01G249500.1 | Wheat | cytosol, mitochondrion | 59.16 | 59.16 |
| HORVU4Hr1G068710.2 | Barley | cytosol, mitochondrion, nucleus, plastid | 58.78 | 58.78 |
| Os03t0212200-01 | Rice | plasma membrane | 30.92 | 57.04 |
| Zm00001d028191_P002 | Maize | cytosol | 60.31 | 47.59 |
| TraesCS4A01G055400.1 | Wheat | nucleus | 59.92 | 46.31 |
| AT4G26050.1 | Thale cress | cytosol | 23.28 | 15.93 |
| AT3G11330.1 | Thale cress | plastid | 29.01 | 15.23 |
| AT5G05850.1 | Thale cress | plastid | 29.01 | 15.02 |
| AT4G29880.1 | Thale cress | nucleus | 21.37 | 15.01 |
| AT2G19330.1 | Thale cress | nucleus, plastid | 21.37 | 14.74 |
| AT1G12970.1 | Thale cress | cytosol | 25.95 | 14.66 |
| AT3G26500.1 | Thale cress | cytosol | 24.43 | 13.59 |
| AT4G35470.1 | Thale cress | nucleus | 27.86 | 13.3 |
| AT2G17440.1 | Thale cress | cytosol | 26.34 | 13.12 |
| AT3G15410.2 | Thale cress | cytosol, mitochondrion, nucleus | 27.1 | 12.03 |
| AT2G30105.1 | Thale cress | cytosol | 17.18 | 12.03 |
Protein Annotations
| Gene3D:3.80.10.10 | MapMan:35.1 | EntrezGene:830685 | UniProt:A0A178UJ79 | ProteinID:AED91220.1 | ArrayExpress:AT5G07910 |
| EnsemblPlantsGene:AT5G07910 | RefSeq:AT5G07910 | TAIR:AT5G07910 | RefSeq:AT5G07910-TAIR-G | EnsemblPlants:AT5G07910.1 | TAIR:AT5G07910.1 |
| EMBL:AY093068 | EMBL:AY128774 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005623 | GO:GO:0005886 | GO:GO:0016020 | InterPro:IPR001611 | InterPro:IPR032675 | InterPro:LRR_dom_sf |
| InterPro:Leu-rich_rpt | InterPro:Leu-rich_rpt_typical-subtyp | RefSeq:NP_196408.2 | ProteinID:OAO93142.1 | PFAM:PF13855 | PO:PO:0000005 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 |
| PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0005052 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PFscan:PS51450 |
| PANTHER:PTHR45289 | PANTHER:PTHR45289:SF1 | UniProt:Q8RWI2 | SMART:SM00364 | SMART:SM00369 | SUPFAM:SSF52058 |
| UniParc:UPI00000A7FFE | SEG:seg | : | : | : | : |
Description
Leucine-rich repeat (LRR) family protein [Source:UniProtKB/TrEMBL;Acc:Q8RWI2]
Coordinates
chr5:-:2521534..2524390
Molecular Weight (calculated)
29138.5 Da
IEP (calculated)
6.758
GRAVY (calculated)
-0.235
Length
262 amino acids
Sequence
(BLAST)
(BLAST)
001: MGCCASNTAG GSKANRISRW RSTGIVGLRD SKLKTFPDEV IEMERAVRTL DLTHNKIADV PGEISKLINM QRLLIADNLV ERLPGNLGKL QSLKVLMLDG
101: NRISCLPDEL GQLVRLEQLS ISRNMLIYLP DTIGSLRNLL LLNVSNNRLK SLPESVGSCA SLEEVQANDN VVEELPASLC NLIQLKSLSL DNNQVNQIPD
201: GLLIHCKSLQ NLSLHNNPIS MDQFQLMEGY QDFEERRKKK FDKQIDSNVM MGSKALDVGV DK
101: NRISCLPDEL GQLVRLEQLS ISRNMLIYLP DTIGSLRNLL LLNVSNNRLK SLPESVGSCA SLEEVQANDN VVEELPASLC NLIQLKSLSL DNNQVNQIPD
201: GLLIHCKSLQ NLSLHNNPIS MDQFQLMEGY QDFEERRKKK FDKQIDSNVM MGSKALDVGV DK
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.