CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 3
cytosol 2
extracellular 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os03t0212200-01	Rice	plasma membrane	47.71	88.03
HORVU4Hr1G068710.2	Barley	cytosol, mitochondrion, nucleus, plastid	87.79	87.79
TraesCS4D01G249500.1	Wheat	cytosol, mitochondrion	87.4	87.4
TraesCS4B01G249200.1	Wheat	cytosol, nucleus, plastid	87.02	87.02
Zm00001d028191_P002	Maize	cytosol	93.51	73.8
GSMUA_Achr4P03290_001	Banana	cytosol	37.79	72.26
TraesCS4A01G055400.1	Wheat	nucleus	87.4	67.55
VIT_17s0000g06940.t01	Wine grape	cytosol	64.5	64.75
KRH54661	Soybean	cytosol	62.6	62.84
KRH63260	Soybean	cytosol	62.6	62.84
Solyc03g115410.2.1	Tomato	cytosol	61.45	62.16
GSMUA_Achr4P03280_001	Banana	plastid	33.59	61.54
Solyc12g040320.1.1	Tomato	mitochondrion	61.07	61.3
AT5G07910.1	Thale cress	cytosol	60.31	60.31
CDX81078	Canola	mitochondrion	59.92	59.92
CDY14024	Canola	mitochondrion	59.92	59.7
Bra005960.1-P	Field mustard	cytosol, mitochondrion, nucleus	59.54	59.54
CDX78316	Canola	cytosol, mitochondrion, nucleus	59.54	59.54
CDY40770	Canola	cytosol	59.92	59.47
Bra028680.1-P	Field mustard	cytosol	59.92	59.47
PGSC0003DMT400063105	Potato	cytosol	58.4	58.4
PGSC0003DMT400013776	Potato	cytosol	49.24	56.83
KXG27059	Sorghum	cytosol, nucleus, plastid	22.9	16.53
EES05350	Sorghum	plastid	26.34	13.72
EES10994	Sorghum	plastid	25.95	13.31
KXG38871	Sorghum	cytosol	27.1	13.2
EES14257	Sorghum	nucleus	29.01	13.15
EER94139	Sorghum	cytosol	17.18	12.03
EES07794	Sorghum	cytosol	25.95	11.6

Protein Annotations

Gene3D:3.80.10.10	MapMan:35.1	EntrezGene:8054207	UniProt:C5WTM6	EnsemblPlants:EER95291	ProteinID:EER95291
ProteinID:EER95291.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005623
GO:GO:0005886	GO:GO:0016020	InterPro:IPR001611	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt
InterPro:Leu-rich_rpt_typical-subtyp	PFAM:PF13855	PFscan:PS51450	PANTHER:PTHR45289	PANTHER:PTHR45289:SF2	SMART:SM00364
SMART:SM00369	EnsemblPlantsGene:SORBI_3001G459500	SUPFAM:SSF52058	unigene:Sbi.11400	UniParc:UPI0001A83458	RefSeq:XP_002468293.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:73517049..73521154

Molecular Weight (calculated)

29188.2 Da

IEP (calculated)

7.777

GRAVY (calculated)

-0.289

Length

262 amino acids

Sequence
(BLAST)

001: MGCCSSRSSD SPASRVTRWR STGIVALRDA RLKEVPNEVL QVGNSLRTLD LTNNKLVEIP QEIGRLVNMQ RLVLAGNLIE NIPANIGYLR NLKILTLDRN
101: RISILPEELG LLSNLQQLSV SQNSLLYLPK SVGDLRNMSL LNVSDNKLKG LPESIGACSS LEEFQANGNA IEDVPSSICN LVCLKSLSLN GNKIRQLPQN
201: LLKDCTALQN LSLHDNPITR DQFQQMDGFE EFEARRRKKF DKQIDSRVMM GSTALDEGVD FH

Best Arabidopsis Sequence Match ( AT5G07910.1 )
(BLAST)

001: MGCCASNTAG GSKANRISRW RSTGIVGLRD SKLKTFPDEV IEMERAVRTL DLTHNKIADV PGEISKLINM QRLLIADNLV ERLPGNLGKL QSLKVLMLDG
101: NRISCLPDEL GQLVRLEQLS ISRNMLIYLP DTIGSLRNLL LLNVSNNRLK SLPESVGSCA SLEEVQANDN VVEELPASLC NLIQLKSLSL DNNQVNQIPD
201: GLLIHCKSLQ NLSLHNNPIS MDQFQLMEGY QDFEERRKKK FDKQIDSNVM MGSKALDVGV DK

Arabidopsis Description

Leucine-rich repeat (LRR) family protein [Source:UniProtKB/TrEMBL;Acc:Q8RWI2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.