Factsheet for PGSC0003DMT400063105

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 2
extracellular 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g115410.2.1	Tomato	cytosol	93.51	94.59
VIT_17s0000g06940.t01	Wine grape	cytosol	75.95	76.25
PGSC0003DMT400013776	Potato	cytosol	64.89	74.89
KRH54661	Soybean	cytosol	74.43	74.71
KRH63260	Soybean	cytosol	74.05	74.33
GSMUA_Achr4P03290_001	Banana	cytosol	35.5	67.88
CDY40770	Canola	cytosol	68.32	67.8
Bra028680.1-P	Field mustard	cytosol	68.32	67.8
CDY14024	Canola	mitochondrion	67.94	67.68
AT5G07910.1	Thale cress	cytosol	67.56	67.56
CDX81078	Canola	mitochondrion	67.18	67.18
CDX78316	Canola	cytosol, mitochondrion, nucleus	66.79	66.79
Bra005960.1-P	Field mustard	cytosol, mitochondrion, nucleus	66.79	66.79
EER95291	Sorghum	cytosol	58.4	58.4
TraesCS4B01G249200.1	Wheat	cytosol, nucleus, plastid	57.63	57.63
HORVU4Hr1G068710.2	Barley	cytosol, mitochondrion, nucleus, plastid	56.87	56.87
TraesCS4D01G249500.1	Wheat	cytosol, mitochondrion	56.87	56.87
GSMUA_Achr4P03280_001	Banana	plastid	29.01	53.15
Os03t0212200-01	Rice	plasma membrane	26.72	49.3
Zm00001d028191_P002	Maize	cytosol	58.4	46.08
TraesCS4A01G055400.1	Wheat	nucleus	57.63	44.54
PGSC0003DMT400016538	Potato	mitochondrion	20.61	14.88
PGSC0003DMT400052889	Potato	cytosol	22.52	13.82
PGSC0003DMT400035497	Potato	cytosol	29.39	13.46
PGSC0003DMT400059678	Potato	nucleus	28.63	13.18
PGSC0003DMT400046655	Potato	cytosol	25.19	12.55
PGSC0003DMT400052945	Potato	nucleus	17.56	12.23

Protein Annotations

EnsemblPlants:PGSC0003DMT400063105	EnsemblPlantsGene:PGSC0003DMG401024548	EntrezGene:102600012	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR001611	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_typical-subtyp
PANTHER:PTHR45289	PFAM:PF13855	PGSC:PGSC0003DMG401024548	SEG:seg	SMART:SM00364	SMART:SM00369
SUPFAM:SSF52058	UniParc:UPI0002953904	UniProt:M1CA27	MapMan:35.1	:	:

Description

Leucine-rich repeat containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG401024548]

Coordinates

chr3:+:55309003..55313602

Molecular Weight (calculated)

29039.1 Da

IEP (calculated)

4.867

GRAVY (calculated)

-0.129

Length

262 amino acids

Sequence
(BLAST)

001: MGCSSSKAAD AGTISRWRST GIVALRDSKL KTFPDEVFDL ERSVVFLEAN SHSSVVTVEI PMEINKLTNL QRLILADNII ERLPMNLGLL QSLKVATFDG
101: NRITNLPDEL GQLVKLERLS VSANLLTSLP DTIGSLRSLV LLNVSNNKLK FLPESIGSCC SLEELQANDN SIEELPGSVC NLIQLKSLCL NNNNFNQMPS
201: NLLRECKGLQ NIALHGNPIT MDQFQQMEGF QEFETRRKMK FDKQIDSNVI ISSKGLDEGV DL

Best Arabidopsis Sequence Match ( AT5G07910.1 )
(BLAST)

001: MGCCASNTAG GSKANRISRW RSTGIVGLRD SKLKTFPDEV IEMERAVRTL DLTHNKIADV PGEISKLINM QRLLIADNLV ERLPGNLGKL QSLKVLMLDG
101: NRISCLPDEL GQLVRLEQLS ISRNMLIYLP DTIGSLRNLL LLNVSNNRLK SLPESVGSCA SLEEVQANDN VVEELPASLC NLIQLKSLSL DNNQVNQIPD
201: GLLIHCKSLQ NLSLHNNPIS MDQFQLMEGY QDFEERRKKK FDKQIDSNVM MGSKALDVGV DK

Arabidopsis Description

Leucine-rich repeat (LRR) family protein [Source:UniProtKB/TrEMBL;Acc:Q8RWI2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.