Factsheet for PGSC0003DMT400046655

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
plastid 2
extracellular 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g112270.2.1	Tomato	cytosol, nucleus, plastid	95.06	95.06
VIT_17s0000g09230.t01	Wine grape	cytosol	57.79	67.71
GSMUA_Achr1P13500_001	Banana	plastid	56.84	61.15
GSMUA_Achr8P28520_001	Banana	cytosol, nucleus, plastid	57.6	60.48
CDY00732	Canola	cytosol	48.1	58.84
KRH63625	Soybean	nucleus	57.22	58.67
CDX73881	Canola	cytosol	47.91	58.6
AT5G05850.1	Thale cress	plastid	54.56	56.72
CDX70122	Canola	cytosol	51.71	56.31
CDX98871	Canola	cytosol	51.71	56.31
KRH57134	Soybean	plastid	54.56	56.16
CDY01012	Canola	plastid	50.95	56.07
AT3G11330.1	Thale cress	plastid	53.04	55.91
Bra009140.1-P	Field mustard	cytosol	53.04	55.36
Bra001399.1-P	Field mustard	plastid	51.9	54.82
CDY08535	Canola	plastid	51.71	54.73
Bra034849.1-P	Field mustard	plastid	51.71	54.73
Zm00001d025681_P001	Maize	plasma membrane	50.19	52.59
TraesCS2D01G335800.1	Wheat	cytosol, plastid	50.0	52.39
EES10994	Sorghum	plastid	50.57	52.05
TraesCS2A01G327100.1	Wheat	cytosol, plastid	49.62	51.89
TraesCS2B01G354900.1	Wheat	plastid	49.43	51.79
TraesCS6D01G191800.1	Wheat	plastid	47.34	50.51
Os02t0593600-01	Rice	plasma membrane	47.91	50.3
EES05350	Sorghum	plastid	46.01	48.11
HORVU6Hr1G053210.1	Barley	cytosol, plastid	46.58	47.48
HORVU2Hr1G082540.6	Barley	cytosol, mitochondrion	36.5	46.83
Zm00001d017071_P002	Maize	plastid	46.58	46.31
HORVU7Hr1G066320.3	Barley	cytosol	24.52	46.07
PGSC0003DMT400016538	Potato	mitochondrion	23.57	34.16
PGSC0003DMT400013776	Potato	cytosol	12.17	28.19
PGSC0003DMT400052889	Potato	cytosol	21.86	26.93
PGSC0003DMT400063105	Potato	cytosol	12.55	25.19
PGSC0003DMT400035497	Potato	cytosol	25.86	23.78
PGSC0003DMT400059678	Potato	nucleus	25.1	23.2
PGSC0003DMT400052945	Potato	nucleus	16.16	22.61

Protein Annotations

EntrezGene:102581610	Gene3D:3.80.10.10	MapMan:35.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR001611	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_typical-subtyp
UniProt:M1BJF1	PFAM:PF00560	PFAM:PF13855	EnsemblPlantsGene:PGSC0003DMG400018117	PGSC:PGSC0003DMG400018117	EnsemblPlants:PGSC0003DMT400046655
PFscan:PS51450	PANTHER:PTHR44373	PANTHER:PTHR44373:SF3	SMART:SM00364	SMART:SM00369	SUPFAM:SSF52058
UniParc:UPI0002966D12	RefSeq:XP_006344469.1	SEG:seg	:	:	:

Description

Leucine-rich repeat-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400018117]

Coordinates

chr3:-:52080061..52084884

Molecular Weight (calculated)

58841.6 Da

IEP (calculated)

4.558

GRAVY (calculated)

-0.323

Length

526 amino acids

Sequence
(BLAST)

001: MDPNPTNFPI LSYVMSKLPS MGRRTTATAD EFDIEKPQNH PQPPPEPHFD ITERMPHLTD PKVVNAMRSA VADVSQTRSM LKTLGERPFH ELVDTARVKL
101: AEIEADMSKR LEEIVLSPRP PEMERQDWRL DMEVKEDECR KAMEKEKEEY KALIALDELH EAYEKMLKDA EQRLEKIYET AVSGGDVESI GESSGEKSSE
201: LNEEVNEEVI GILQEALGKS VERVDLSGRQ LRMLPEAFGK IHSLIVLNLS NNQLTVVPDS IASLENLEEL HLSSNLLESL PDSIGLLFSL KILDVSGNKL
301: VTLPDSICHC RSLVEFDAGF NKLSYLPTNI GYELVNVKRL SLSFNKLRSL PTSIGEMKSL RLLDMHFNEL HGLPHSFGNL TNLEILNLSN NFSDLTKLPD
401: TIGDLINLKE LDLSNNQIHE LPDTISRLDN LTVLKLDENP LVIPPKEVVV EGVEAVKAYM IKRRLDILLA EEPEIMLEEV GQTPTGLLTR STSWLSGTVS
501: NVLGTVAGYL GGGGKSDPDH YLNQQL

Best Arabidopsis Sequence Match ( AT5G05850.1 )
(BLAST)

001: MATELNPKNF PVLSYVLDRL PSFTAKSSSS SDVEPPPSKS DPSSSSNHSI EIVTQMPHLA HPDVLASMTN ATADVSQTRS VLRTLGPRPD HETVDRARAR
101: LREIDASLSE SFEEIALSPN DIDVAEKEQK RREAVEQEKI WYKSILKLNE LHESYEKLLK EAEERLVRIY ESAEKNAAAV AEEEAAEVEV NEEVVSILQQ
201: AAENPLDRVD LSGRKLKLLP EAFGKIQGLL VLNLYNNQLQ AIPDSIAGLH NLLELDVSTN FLETLPDSIG LLSKLKILNV SCNKLTTLPD SICHCGSLVV
301: LDASYNNLTY LPTNIGFELV KLEKLLIHLN KIRSLPTSIG EMRSLRYLDA HFNELNGLPN SFGLLTNLEY LNLSSNFSDL QDLPASFGDL ISLQELDLSN
401: NQIHSLPDAF GTLVNLTKLN LDQNPLVVPP DEVVKQGVDA VKMYMGKRWV SMLEEEEKMA NMKDEMDQTN TDWLTRTTSK LKTYVTEVSE YLGSNPPRDP
501: YLDQQL

Arabidopsis Description

PIRL1Plant intracellular Ras-group-related LRR protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFJ3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.