Factsheet for PGSC0003DMT400052889

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
extracellular 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, extracellular, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	extracellular
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g006970.2.1	Tomato	cytosol	94.15	79.13
VIT_02s0012g01010.t01	Wine grape	cytosol	63.0	50.47
KRH04326	Soybean	cytosol	58.31	48.07
GSMUA_Achr4P19230_001	Banana	cytosol	58.08	47.6
Zm00001d030062_P001	Maize	cytosol	48.01	47.23
GSMUA_Achr4P21530_001	Banana	cytosol	57.85	46.52
Os10t0572300-01	Rice	plasma membrane	57.61	45.3
TraesCS1D01G194700.1	Wheat	cytosol	55.5	44.47
Zm00001d047045_P001	Maize	extracellular, mitochondrion, plasma membrane	55.5	44.38
TraesCS1A01G190500.1	Wheat	cytosol	55.27	44.19
TraesCS1B01G205800.2	Wheat	cytosol	55.27	44.11
KXG38871	Sorghum	cytosol	54.8	43.49
HORVU1Hr1G049900.1	Barley	cytosol, extracellular, mitochondrion, plastid	55.74	41.54
KRH58211	Soybean	mitochondrion	21.55	38.98
PGSC0003DMT400035497	Potato	cytosol	50.12	37.41
PGSC0003DMT400059678	Potato	nucleus	48.01	36.03
PGSC0003DMT400016538	Potato	mitochondrion	21.08	24.79
PGSC0003DMT400063105	Potato	cytosol	13.82	22.52
PGSC0003DMT400013776	Potato	cytosol	11.94	22.47
PGSC0003DMT400046655	Potato	cytosol	26.93	21.86
PGSC0003DMT400052945	Potato	nucleus	16.63	18.88

Protein Annotations

Gene3D:3.80.10.10	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150
GO:GO:0009416	GO:GO:0009628	InterPro:IPR001611	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt
InterPro:Leu-rich_rpt_typical-subtyp	UniProt:M1BU40	PFAM:PF13855	EnsemblPlantsGene:PGSC0003DMG400020520	PGSC:PGSC0003DMG400020520	EnsemblPlants:PGSC0003DMT400052889
PFscan:PS51450	PANTHER:PTHR44513	PANTHER:PTHR44513:SF3	SMART:SM00364	SMART:SM00369	SUPFAM:SSF52058
UniParc:UPI000295851E	:	:	:	:	:

Description

Leucine-rich repeat-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400020520]

Coordinates

chr8:-:1272027..1275308

Molecular Weight (calculated)

48260.7 Da

IEP (calculated)

5.932

GRAVY (calculated)

-0.154

Length

427 amino acids

Sequence
(BLAST)

001: MVLFQSKEQR KEAVQLIELD KTYQDFDVLI QEATELISGD TQMGKINSFE DPIGEIGKKD ENLMKGLVTS CELITVSSSG IKHKEKYSLM KVAALIENAA
101: KTRARVVDLH NKLMDKIEWL PLSLGKLVNV TELNVADNQI MALPTTIGSL NALTKLDLHS NQIINLPDSF GELINLTDLD LHANRLKSLP ASFRNLVNLI
201: DLDLGSNRFA HLPDFVGNLT SLKRLNVETN QLEELPYTVG FCSSLVELRL DFNQLKALPE AMGMLEHLEI LTLHINRVKG LPTTMGNLSH LRELDVSFNE
301: VENIPETFCF AVSLEKLNLA NNFADLKTLP RSIGNLENLE ELDISNSQIR TLPDSFRLLS KLKTFRADET PLEVPPRQII KLGAQVVVEY MAEFVAKNEL
401: QLQRPKRRRA FFSLSCLFPN TERKRRI

Best Arabidopsis Sequence Match ( AT3G11330.1 )
(BLAST)

001: MAAEPNPKNF PVLSYVLARL PSFTAKSPSS SVPPFDIEQP PPSSSSSSIE IVTQMPHLTQ PDVLASMTSA ISDVAETRSI LRTLGPRPDH ESVDKARAKL
101: SEIESFLSES FEDIALTDAA AKDEKRRQEM DQEKTWCESI LKLDEVHASY EKLLKEAEER LVRIYESAEK NAAEDEENVA AVEVNEEVVG ILQHASANPV
201: DRVDLSGRKL RLLPEAFGRI QGLLVLNLSN NKLESIPDSI AGLHSLVELD VSTNSLETLP DSIGLLSKLK ILNVSTNKLT SLPDSICRCG SLVILDVSFN
301: RLTYLPTNIG PELVNLEKLL VQYNKIRSFP TSIGEMRSLK HLDAHFNELN GLPDSFVLLT NLEYLNLSSN FSDLKDLPFS FGELISLQEL DLSNNQIHAL
401: PDTFGTLDSL TKLNVDQNPL VVPPEEVVKE GVEAVKTYMG QRRISMLEEE EKKKMEEEME QANAGWLTRT TSKLKTYVAD VSEYLGSNSP RDPYLERQL

Arabidopsis Description

PIRL9Plant intracellular Ras-group-related LRR protein 9 [Source:UniProtKB/Swiss-Prot;Acc:Q8VYG9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.