Factsheet for VIT_02s0012g01010.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400052889	Potato	cytosol	50.47	63.0
KRH04326	Soybean	cytosol	60.6	62.36
GSMUA_Achr4P19230_001	Banana	cytosol	60.41	61.8
GSMUA_Achr4P21530_001	Banana	cytosol	61.16	61.39
Solyc08g006970.2.1	Tomato	cytosol	57.41	60.24
TraesCS1D01G194700.1	Wheat	cytosol	56.66	56.66
TraesCS1A01G190500.1	Wheat	cytosol	56.29	56.18
TraesCS1B01G205800.2	Wheat	cytosol	56.29	56.07
Os10t0572300-01	Rice	plasma membrane	56.85	55.8
Zm00001d030062_P001	Maize	cytosol	45.22	55.53
KXG38871	Sorghum	cytosol	55.72	55.2
Zm00001d047045_P001	Maize	extracellular, mitochondrion, plasma membrane	54.22	54.12
HORVU1Hr1G049900.1	Barley	cytosol, extracellular, mitochondrion, plastid	56.66	52.71
VIT_07s0031g02310.t01	Wine grape	cytosol	50.66	48.47
KRH58211	Soybean	mitochondrion	19.89	44.92
VIT_11s0052g00390.t01	Wine grape	cytosol	19.14	33.12
VIT_17s0000g09230.t01	Wine grape	cytosol	24.39	28.95
VIT_17s0000g06940.t01	Wine grape	cytosol	13.88	28.35
VIT_06s0004g07050.t01	Wine grape	cytosol, plastid	15.2	21.32
VIT_19s0014g03000.t01	Wine grape	cytosol, mitochondrion	16.51	15.07

Protein Annotations

EntrezGene:100257457	wikigene:100257457	Gene3D:3.80.10.10	MapMan:35.1	ProteinID:CCB57919	ProteinID:CCB57919.1
UniProt:F6HTA9	EMBL:FN596247	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005623	GO:GO:0005886	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009416
GO:GO:0009628	GO:GO:0009987	GO:GO:0016020	InterPro:IPR001611	InterPro:IPR032675	EntrezGene:LOC100257457
wikigene:LOC100257457	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_typical-subtyp	PFAM:PF00560	PFAM:PF13855
PFscan:PS51450	PANTHER:PTHR44513	PANTHER:PTHR44513:SF3	SMART:SM00364	SMART:SM00369	SUPFAM:SSF52058
UniParc:UPI00015C8FF9	ArrayExpress:VIT_02s0012g01010	EnsemblPlantsGene:VIT_02s0012g01010	EnsemblPlants:VIT_02s0012g01010.t01	unigene:Vvi.17715	RefSeq:XP_002278650
RefSeq:XP_002278650.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr2:-:6975111..6977453

Molecular Weight (calculated)

59709.1 Da

IEP (calculated)

5.120

GRAVY (calculated)

-0.271

Length

533 amino acids

Sequence
(BLAST)

001: MAGMSKQDPS PAFAETVEEI MRIYRSLPPR PKIEEVEAAM TVIRTADCEE QKRLEEVARQ EVPQGVPPEL FSVLQQARKT MVLFQCHEER EEALHLVERN
101: KLFNTFDELI QKASEVVSGG VPIEKQIDLG DPVGKSGRKD VISVESLIKR GEDEESGADG FKGLVRSSSA KAIFVSGEDD TEKFNLMKVA ALIEKTAKIK
201: AGVLDLQGKL MEKIEWLPTS IGKLSDITEL NLSENRIMAL PSTMSGLRAL TKLDVHSNQL INLPDSIGEL VNLADLDLHA NRLRSLPASF GNLVNLINLN
301: LSSNQFTHLP DNIGSLTSLK RLNVDTNELE EVPYTIGSCT SLLELRLDFN QLRALPEAVG KLECLEILTL HYNRIKGLPT TIGNLSNLRE LDVSFNELES
401: VPENLCFAVK LKKLNVGKNF ADLRALPRSI GNLEMLEELD ISDCQIRMLP DSFRFLSKLR VLRADETPLE VPPREVTKLG AQEVVQYMAD LTAKWEARPL
501: SSKKKGFWFW VCSIFRARTK RTTDSKESQK LDE

Best Arabidopsis Sequence Match ( AT4G35470.1 )
(BLAST)

001: MDLMQMDKRL DSTEQVVEEI MRIHRSLPAR PGIDEVEAAK GLIDNVEKED QACLEAIARQ RKSSEVPGEL FMVLQEMKKG YVQFRSKEQI REALKLLDLE
101: SVHSLFDDFI QRASNCIASP SSNGSVSSRP PLPPATTTAA RSDSQSSLNF SERAPVRPKD MVSRDDSFVT KSKPSSLYSD GFAAPPRRPQ ILDSTLTTGN
201: DGEKLSLIKL ASLIEVSAKK ATQEINLQNK LTEQLEWLPD SLGKLSSLTS LDLSENHIVV LPNTIGGLSS LTKLDLHSNR IGQLPESIGE LLNLVYLNLG
301: SNQLSSLPSA FSRLVRLEEL DLSCNNLPIL PESIGSLVSL KKLDVETNDI EEIPYSIGGC SSLIELRADY NKLKALPEAI GKITTLEILS VRYNNIRQLP
401: TTMSSLASLK ELDVSFNELE SVPESLCFAT TLVKLNIGNN FADMVSLPRS IGNLEMLEEL DISNNQIRVL PDSFKMLTKL RVFRAQENPL HIPPRDIAEK
501: GPQAVVQYMN DLVETRNAKS LMVKPKKSWV QMCFFSKSNK RKQSSMEIV

Arabidopsis Description

PIRL4Plant intracellular Ras-group-related LRR protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVW8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.