Factsheet for VIT_07s0031g02310.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
extracellular 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, extracellular, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	extracellular
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_05s0049g00560.t01
VIT_05s0049g00640.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G35470.1	VIT_05s0049g00560.t01	AT5G43400.1	21798944
AT4G35470.1	VIT_05s0049g00640.t01	AT5G43400.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH76512	Soybean	nucleus	73.25	71.08
CDX72539	Canola	nucleus	49.91	70.74
KRH28950	Soybean	cytosol	71.45	70.19
KRH39397	Soybean	nucleus	69.12	69.87
KRH07815	Soybean	cytosol	67.86	68.98
GSMUA_Achr5P23850_001	Banana	cytosol	67.86	68.6
AT4G35470.1	Thale cress	nucleus	66.43	67.4
GSMUA_Achr8P25490_001	Banana	nucleus	66.07	66.55
Bra024514.1-P	Field mustard	cytosol	58.89	65.6
CDY66405	Canola	cytosol	58.71	65.4
PGSC0003DMT400059678	Potato	nucleus	66.79	65.38
PGSC0003DMT400035497	Potato	cytosol	66.97	65.21
CDY07843	Canola	nucleus	58.17	64.8
CDX75505	Canola	cytosol	62.48	64.44
Solyc02g082350.2.1	Tomato	nucleus	66.43	64.12
CDX69142	Canola	cytosol	62.48	63.97
AT2G17440.1	Thale cress	cytosol	60.14	63.69
Bra037271.1-P	Field mustard	cytosol	58.71	63.5
CDY30364	Canola	cytosol	58.17	63.41
Bra011617.1-P	Field mustard	cytosol	51.89	63.24
Bra017712.1-P	Field mustard	nucleus	61.76	63.12
CDY40632	Canola	nucleus	61.76	63.12
CDY26809	Canola	nucleus	58.89	61.42
Zm00001d031470_P001	Maize	plasma membrane	58.71	56.67
TraesCS7B01G143600.3	Wheat	nucleus	57.09	56.08
EES14257	Sorghum	nucleus	57.81	55.71
TraesCS7A01G247900.2	Wheat	cytosol	56.37	55.09
TraesCS7D01G246700.1	Wheat	nucleus	56.01	54.74
Os08t0511700-00	Rice	plasma membrane	56.01	54.36
VIT_02s0012g01010.t01	Wine grape	cytosol	48.47	50.66
VIT_11s0052g00390.t01	Wine grape	cytosol	18.85	34.09
VIT_17s0000g06940.t01	Wine grape	cytosol	14.18	30.27
VIT_17s0000g09230.t01	Wine grape	cytosol	23.88	29.62
GSMUA_Achr6P03430_001	Banana	nucleus	21.54	25.42
VIT_06s0004g07050.t01	Wine grape	cytosol, plastid	14.54	21.32
VIT_19s0014g03000.t01	Wine grape	cytosol, mitochondrion	18.31	17.47

Protein Annotations

EntrezGene:100259527	wikigene:100259527	Gene3D:3.80.10.10	MapMan:35.1	EMBL:AM468089	ProteinID:CAN77180
ProteinID:CAN77180.1	ProteinID:CBI21582	ProteinID:CBI21582.3	UniProt:D7SWD3	EMBL:FN595233	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0009416	GO:GO:0009628	GO:GO:0009987	GO:GO:0016020
InterPro:IPR001611	InterPro:IPR032675	EntrezGene:LOC100259527	wikigene:LOC100259527	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt
InterPro:Leu-rich_rpt_typical-subtyp	PFAM:PF13855	PRINTS:PR00019	PFscan:PS51450	PANTHER:PTHR44513	PANTHER:PTHR44513:SF1
SMART:SM00364	SMART:SM00365	SMART:SM00369	SUPFAM:SSF52058	UniParc:UPI00015C9360	ArrayExpress:VIT_07s0031g02310
EnsemblPlantsGene:VIT_07s0031g02310	EnsemblPlants:VIT_07s0031g02310.t01	unigene:Vvi.12099	unigene:Vvi.25340	RefSeq:XP_002276062	RefSeq:XP_002276062.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr7:-:18418423..18421725

Molecular Weight (calculated)

61928.5 Da

IEP (calculated)

7.159

GRAVY (calculated)

-0.297

Length

557 amino acids

Sequence
(BLAST)

001: MESSAKSVDD VVGEIMRIHR SLPTRPGIDE VEAARTLIRN VEKEDQARLE AIGRQPRNPD VPEELFMVFQ EMQKNLVSLQ SKEEKREALK LLDLEGVHLM
101: FDDLIERASR CLPSTSISHH SSSSSSSPST LSKSSESAPA SASATAFNST VFKETPKVTD LFTRDDSYVK KTKSTFYVDG IGASPANLST PQILDSSLKS
201: PSTSGQDSEK LSLIKLASLI EVSSKKGTRD LNLQNKLMDQ IEWLPDSIGK LSSLMTLDLS ENRIVALPAT IGGLSSLTKL DLHSNRIAEL PDCIGNLLSV
301: VVLDLRGNQL TSLPATFCRL VRLEELDLSS NRLSSLPESI GSLVKLKKLS VETNDIEEIP HTIGQCSSLK ELRADYNRLK ALPEAVGRIQ SLEILSVRYN
401: NIKQLPTTMS SLSNLRELDV SFNELESIPE SLCFATTLVK MNIGSNFADL QYLPRSIGNL EMLEELDISN NQIRVLPDSF KMLTRLRVLR LDQNPLEVPP
501: RHVAEMGAQA VVQYMAELVA KREVKSLPVK QKKTWAQRCF FSRSNKRKRN GMDYVKA

Best Arabidopsis Sequence Match ( AT4G35470.1 )
(BLAST)

001: MDLMQMDKRL DSTEQVVEEI MRIHRSLPAR PGIDEVEAAK GLIDNVEKED QACLEAIARQ RKSSEVPGEL FMVLQEMKKG YVQFRSKEQI REALKLLDLE
101: SVHSLFDDFI QRASNCIASP SSNGSVSSRP PLPPATTTAA RSDSQSSLNF SERAPVRPKD MVSRDDSFVT KSKPSSLYSD GFAAPPRRPQ ILDSTLTTGN
201: DGEKLSLIKL ASLIEVSAKK ATQEINLQNK LTEQLEWLPD SLGKLSSLTS LDLSENHIVV LPNTIGGLSS LTKLDLHSNR IGQLPESIGE LLNLVYLNLG
301: SNQLSSLPSA FSRLVRLEEL DLSCNNLPIL PESIGSLVSL KKLDVETNDI EEIPYSIGGC SSLIELRADY NKLKALPEAI GKITTLEILS VRYNNIRQLP
401: TTMSSLASLK ELDVSFNELE SVPESLCFAT TLVKLNIGNN FADMVSLPRS IGNLEMLEEL DISNNQIRVL PDSFKMLTKL RVFRAQENPL HIPPRDIAEK
501: GPQAVVQYMN DLVETRNAKS LMVKPKKSWV QMCFFSKSNK RKQSSMEIV

Arabidopsis Description

PIRL4Plant intracellular Ras-group-related LRR protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVW8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.