Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plasma membrane:
23508561
mitochondrion: 27297264 plasma membrane: 27341663 |
msms PMID:
27297264
doi
Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.
msms PMID:
27341663
doi
Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d045614_P001 | |
| Zm00001d053740_P001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G35470.1 | Zm00001d045614_P001 | AT5G43400.1 | 21798944 |
| AT4G35470.1 | Zm00001d053740_P001 | AT5G43400.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES14257 | Sorghum | nucleus | 90.47 | 90.31 |
| TraesCS7B01G143600.3 | Wheat | nucleus | 76.78 | 78.13 |
| TraesCS7A01G247900.2 | Wheat | cytosol | 75.91 | 76.84 |
| TraesCS7D01G246700.1 | Wheat | nucleus | 75.39 | 76.32 |
| Os08t0511700-00 | Rice | plasma membrane | 75.74 | 76.13 |
| CDX72539 | Canola | nucleus | 42.29 | 62.09 |
| GSMUA_Achr5P23850_001 | Banana | cytosol | 58.58 | 61.34 |
| GSMUA_Achr8P25490_001 | Banana | nucleus | 58.41 | 60.94 |
| VIT_07s0031g02310.t01 | Wine grape | cytosol | 56.67 | 58.71 |
| KRH39397 | Soybean | nucleus | 54.59 | 57.17 |
| KRH76512 | Soybean | nucleus | 56.67 | 56.97 |
| KRH07815 | Soybean | cytosol | 53.73 | 56.57 |
| KRH28950 | Soybean | cytosol | 55.11 | 56.08 |
| Bra011617.1-P | Field mustard | cytosol | 44.37 | 56.02 |
| CDX75505 | Canola | cytosol | 51.3 | 54.81 |
| Bra024514.1-P | Field mustard | cytosol | 47.49 | 54.8 |
| CDX69142 | Canola | cytosol | 51.65 | 54.78 |
| AT4G35470.1 | Thale cress | nucleus | 51.99 | 54.64 |
| CDY66405 | Canola | cytosol | 47.31 | 54.6 |
| Bra017712.1-P | Field mustard | nucleus | 51.3 | 54.31 |
| CDY40632 | Canola | nucleus | 51.3 | 54.31 |
| CDY07843 | Canola | nucleus | 46.97 | 54.2 |
| PGSC0003DMT400059678 | Potato | nucleus | 51.99 | 52.72 |
| AT2G17440.1 | Thale cress | cytosol | 47.49 | 52.09 |
| Bra037271.1-P | Field mustard | cytosol | 46.27 | 51.84 |
| Solyc02g082350.2.1 | Tomato | nucleus | 51.82 | 51.82 |
| CDY30364 | Canola | cytosol | 45.75 | 51.66 |
| PGSC0003DMT400035497 | Potato | cytosol | 51.13 | 51.57 |
| CDY26809 | Canola | nucleus | 46.79 | 50.56 |
| Zm00001d030062_P001 | Maize | cytosol | 36.05 | 47.93 |
| Zm00001d047045_P001 | Maize | extracellular, mitochondrion, plasma membrane | 44.02 | 47.57 |
| Zm00001d002399_P001 | Maize | nucleus | 15.6 | 35.86 |
| Zm00001d002402_P001 | Maize | cytosol, nucleus, plastid | 19.41 | 30.85 |
| Zm00001d025681_P001 | Maize | plasma membrane | 23.4 | 26.89 |
| Zm00001d017071_P002 | Maize | plastid | 24.09 | 26.28 |
| GSMUA_Achr6P03430_001 | Banana | nucleus | 21.49 | 26.27 |
| Zm00001d028191_P002 | Maize | cytosol | 13.52 | 23.49 |
| Zm00001d018525_P004 | Maize | cytosol | 16.29 | 15.06 |
Protein Annotations
| EntrezGene:100274964 | Gene3D:3.80.10.10 | MapMan:35.1 | UniProt:A0A1D6KJ04 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0008150 | GO:GO:0009416 | GO:GO:0009628 | InterPro:IPR001611 | InterPro:IPR032675 |
| InterPro:LRR_dom_sf | InterPro:Leu-rich_rpt | InterPro:Leu-rich_rpt_typical-subtyp | ProteinID:ONM02929.1 | PFAM:PF13855 | PFscan:PS51450 |
| PANTHER:PTHR44513 | PANTHER:PTHR44513:SF1 | SMART:SM00364 | SMART:SM00365 | SMART:SM00369 | SUPFAM:SSF52058 |
| UniParc:UPI0002217405 | EnsemblPlantsGene:Zm00001d031470 | EnsemblPlants:Zm00001d031470_P001 | EnsemblPlants:Zm00001d031470_T001 | SEG:seg | : |
Description
Plant intracellular Ras-group-related LRR protein 4
Coordinates
chr1:-:191263840..191267976
Molecular Weight (calculated)
62351.8 Da
IEP (calculated)
7.310
GRAVY (calculated)
-0.148
Length
577 amino acids
Sequence
(BLAST)
(BLAST)
001: MGTALDAAAF GSVDGVVGEI MRLHRALPAR PAPEEAEAAE ALVRAADREE RARLDAAARL RRPPAVPDEL FGVALEMHRA LAAFHCREQK RDAARLLELD
101: ALHGLFDDLI QRASQCVPSS SGSSSTRAAP RVAAATTAAA SSSFAAASSS AVAADSGAHR YSSMEPNGFS APRMVTGMGR VSMDDSYVKK AKAAVWDDRV
201: VASSSHMPRG AVSANSVATP VDGGYGDDNQ KLTLIKLASM IEVAAKKGAR DLNLQGKLMN QIEWLPDSIG KLTGLVTLDI SENRILALPE AIGMLSSLAK
301: LDLHANRIAQ LPESIGDLSN LIYLDLRGNQ LASLPASLGR LVKLEELDVS ANHLTSLPDS IGSLTRLKKL IAETNDLDEL PYTIGNCVSL VELRVGYNHL
401: KALPEAVGKL ESLEVLSVRY NTIRGLPTTM ASLTKLKEVD ASFNELESIP ENFCFVTSLI KLNVGNNFAD LQSLPRSIGN LEMLEELDIS NNQIRVLPDS
501: FGNLQRLRVL RAEENPLQVP PRDVALKGAQ AAVQYMAEYV AKKATRSQPM KTKKTWAQFC FFSRPNKRKH DRIDTAS
101: ALHGLFDDLI QRASQCVPSS SGSSSTRAAP RVAAATTAAA SSSFAAASSS AVAADSGAHR YSSMEPNGFS APRMVTGMGR VSMDDSYVKK AKAAVWDDRV
201: VASSSHMPRG AVSANSVATP VDGGYGDDNQ KLTLIKLASM IEVAAKKGAR DLNLQGKLMN QIEWLPDSIG KLTGLVTLDI SENRILALPE AIGMLSSLAK
301: LDLHANRIAQ LPESIGDLSN LIYLDLRGNQ LASLPASLGR LVKLEELDVS ANHLTSLPDS IGSLTRLKKL IAETNDLDEL PYTIGNCVSL VELRVGYNHL
401: KALPEAVGKL ESLEVLSVRY NTIRGLPTTM ASLTKLKEVD ASFNELESIP ENFCFVTSLI KLNVGNNFAD LQSLPRSIGN LEMLEELDIS NNQIRVLPDS
501: FGNLQRLRVL RAEENPLQVP PRDVALKGAQ AAVQYMAEYV AKKATRSQPM KTKKTWAQFC FFSRPNKRKH DRIDTAS
001: MDLMQMDKRL DSTEQVVEEI MRIHRSLPAR PGIDEVEAAK GLIDNVEKED QACLEAIARQ RKSSEVPGEL FMVLQEMKKG YVQFRSKEQI REALKLLDLE
101: SVHSLFDDFI QRASNCIASP SSNGSVSSRP PLPPATTTAA RSDSQSSLNF SERAPVRPKD MVSRDDSFVT KSKPSSLYSD GFAAPPRRPQ ILDSTLTTGN
201: DGEKLSLIKL ASLIEVSAKK ATQEINLQNK LTEQLEWLPD SLGKLSSLTS LDLSENHIVV LPNTIGGLSS LTKLDLHSNR IGQLPESIGE LLNLVYLNLG
301: SNQLSSLPSA FSRLVRLEEL DLSCNNLPIL PESIGSLVSL KKLDVETNDI EEIPYSIGGC SSLIELRADY NKLKALPEAI GKITTLEILS VRYNNIRQLP
401: TTMSSLASLK ELDVSFNELE SVPESLCFAT TLVKLNIGNN FADMVSLPRS IGNLEMLEEL DISNNQIRVL PDSFKMLTKL RVFRAQENPL HIPPRDIAEK
501: GPQAVVQYMN DLVETRNAKS LMVKPKKSWV QMCFFSKSNK RKQSSMEIV
101: SVHSLFDDFI QRASNCIASP SSNGSVSSRP PLPPATTTAA RSDSQSSLNF SERAPVRPKD MVSRDDSFVT KSKPSSLYSD GFAAPPRRPQ ILDSTLTTGN
201: DGEKLSLIKL ASLIEVSAKK ATQEINLQNK LTEQLEWLPD SLGKLSSLTS LDLSENHIVV LPNTIGGLSS LTKLDLHSNR IGQLPESIGE LLNLVYLNLG
301: SNQLSSLPSA FSRLVRLEEL DLSCNNLPIL PESIGSLVSL KKLDVETNDI EEIPYSIGGC SSLIELRADY NKLKALPEAI GKITTLEILS VRYNNIRQLP
401: TTMSSLASLK ELDVSFNELE SVPESLCFAT TLVKLNIGNN FADMVSLPRS IGNLEMLEEL DISNNQIRVL PDSFKMLTKL RVFRAQENPL HIPPRDIAEK
501: GPQAVVQYMN DLVETRNAKS LMVKPKKSWV QMCFFSKSNK RKQSSMEIV
Arabidopsis Description
PIRL4Plant intracellular Ras-group-related LRR protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVW8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.