CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY22349
CDY60899

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G35470.1	CDY22349	AT5G43400.1	21798944
AT4G35470.1	CDY60899	AT5G43400.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY40632	Canola	nucleus	94.4	68.07
CDX75505	Canola	cytosol	86.26	62.78
CDX69142	Canola	cytosol	86.77	62.68
AT4G35470.1	Thale cress	nucleus	87.28	62.48
CDY66405	Canola	cytosol	69.21	54.4
CDY07843	Canola	nucleus	67.68	53.2
CDY30364	Canola	cytosol	68.96	53.03
CDY26809	Canola	nucleus	69.47	51.12
VIT_07s0031g02310.t01	Wine grape	cytosol	70.74	49.91
KRH28950	Soybean	cytosol	70.48	48.85
KRH39397	Soybean	nucleus	68.19	48.64
KRH76512	Soybean	nucleus	70.99	48.61
KRH07815	Soybean	cytosol	66.92	47.99
PGSC0003DMT400035497	Potato	cytosol	67.68	46.5
GSMUA_Achr5P23850_001	Banana	cytosol	63.61	45.37
PGSC0003DMT400059678	Potato	nucleus	65.65	45.34
Solyc02g082350.2.1	Tomato	nucleus	66.41	45.23
GSMUA_Achr8P25490_001	Banana	nucleus	62.6	44.48
Os08t0511700-00	Rice	plasma membrane	62.85	43.03
EES14257	Sorghum	nucleus	62.85	42.73
TraesCS7B01G143600.3	Wheat	nucleus	61.58	42.68
Zm00001d031470_P001	Maize	plasma membrane	62.09	42.29
TraesCS7D01G246700.1	Wheat	nucleus	61.07	42.11
TraesCS7A01G247900.2	Wheat	cytosol	61.07	42.11
CDY30187	Canola	nucleus	23.41	32.97
CDY46713	Canola	nucleus	26.72	28.69
CDY39144	Canola	nucleus, plastid	26.72	27.34
CDX82667	Canola	nucleus, plastid	26.72	27.34
CDX89369	Canola	cytosol, plastid	27.48	27.14
CDX94383	Canola	cytosol	27.23	26.88
CDY42760	Canola	cytosol, plastid	26.97	26.84
CDX92748	Canola	cytosol, plasma membrane, plastid	24.68	25.94
CDX73881	Canola	cytosol	28.24	25.81
CDY00732	Canola	cytosol	27.99	25.58
GSMUA_Achr6P03430_001	Banana	nucleus	29.77	24.79
CDY16042	Canola	cytosol	28.75	24.41
CDY26604	Canola	cytosol	28.75	24.41
CDX98871	Canola	cytosol	29.77	24.22
CDX70122	Canola	cytosol	29.77	24.22
CDX78316	Canola	cytosol, mitochondrion, nucleus	16.03	24.05
CDY14024	Canola	mitochondrion	16.03	23.95
CDY40770	Canola	cytosol	16.03	23.86
CDX81078	Canola	mitochondrion	15.78	23.66
CDY48988	Canola	cytosol	28.24	23.47
CDY69629	Canola	cytosol	19.85	22.94
CDY01012	Canola	plastid	27.74	22.8
CDY08535	Canola	plastid	27.99	22.13
CDY29703	Canola	cytosol	16.54	17.91
CDX97851	Canola	cytosol	16.29	17.63
CDX97667	Canola	nucleus	22.65	15.21
CDY56828	Canola	nucleus	22.65	15.21

Protein Annotations

Gene3D:3.80.10.10	MapMan:35.1	EnsemblPlants:CDX72539	ProteinID:CDX72539	ProteinID:CDX72539.1	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00100076001	InterPro:IPR001611	InterPro:IPR032675	InterPro:LRR_dom_sf
InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_typical-subtyp	PFAM:PF00560	PFAM:PF13516	PFAM:PF13855	PRINTS:PR00019
PFscan:PS51450	PANTHER:PTHR44513	PANTHER:PTHR44513:SF1	SMART:SM00364	SMART:SM00369	SUPFAM:SSF52058
UniParc:UPI0004EE5DCB	SEG:seg	:	:	:	:

Description

BnaC07g45610D

Coordinates

chrLK031796:+:1765422..1767271

Molecular Weight (calculated)

43576.6 Da

IEP (calculated)

6.416

GRAVY (calculated)

-0.165

Length

393 amino acids

Sequence
(BLAST)

001: MVSRDDSYVT TKAKPSSLYG DALVAHRSPQ LLDSTLAAGK SPGNDGEKLS LIKLASLIEV SSKQATQVLN LQNKLTEQVE WLPDSIGKLS SLTSLDLSEN
101: HIVVLPNTIG GLSSLTKLDL HSNRITHLPE SIGELLNLVY LNLSSNQLSS LPSSFSKLLK LEELDLSSNN LHILPESIGS LVSLKKLDVE TNEIEEFPYS
201: IGGCSSLKEV RADYNKLKAL PEAIGKITTL EILSVRYNNI RQLPTTMSSL ASLKEVDVSF NELESVPESL CFATTLVKLN VGNNFADMVS LPRSIGNLEM
301: LEELDISNNQ IRVLPESFRM LTKLRVFRAH ENPLQVPPRE IAEKGPQAVV QYMNDLVELR NEKSLVVKPK KSWVQMCFFP KSNKRKHNSM EIV

Best Arabidopsis Sequence Match ( AT2G17440.1 )
(BLAST)

001: MDSKEMVVEE IMRIHRSLPL RPEIDDVETA TSLIQNVEKE DRNRLEAIDK LVKTSSSEVP LELFNVFKEM KKSLVRFQST EQTREATKIL DLESVHVVFD
101: ELIQRASFCI ASPNSTTALP RSVPVPAPVV SSDEIPFKSK EIISRDDTFV KKAKSSFYSD GLLAPSKPQV LDSTLHQAKN VAGNDGEKLS LIKLASLIEV
201: SAKKATQELN LQHRLMDQLE WLPDSLGKLS SLVRLDLSEN CIMVLPATIG GLISLTRLDL HSNRIGQLPE SIGDLLNLVN LNLSGNQLSS LPSSFNRLIH
301: LEELDLSSNS LSILPESIGS LVSLKKLDVE TNNIEEIPHS ISGCSSMEEL RADYNRLKAL PEAVGKLSTL EILTVRYNNI RQLPTTMSSM ANLKELDVSF
401: NELESVPESL CYAKTLVKLN IGNNFANLRS LPGLIGNLEK LEELDMSNNQ IRFLPYSFKT LSNLRVLQTE QNPLEELPRD ITEKGAQAVV QYMNDLVEAR
501: NTKSQRTKPK KSWVNSICFF CKSSTN

Arabidopsis Description

PIRL5Plant intracellular Ras-group-related LRR protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q5G5E0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.