Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra021606.1-P | Field mustard | cytosol | 96.69 | 96.69 |
| CDY29703 | Canola | cytosol | 96.42 | 96.42 |
| AT2G30105.1 | Thale cress | cytosol | 87.33 | 84.76 |
| VIT_06s0004g07050.t01 | Wine grape | cytosol, plastid | 63.36 | 60.53 |
| PGSC0003DMT400052945 | Potato | nucleus | 60.06 | 57.98 |
| KRG98234 | Soybean | cytosol | 59.78 | 57.87 |
| Solyc06g007250.2.1 | Tomato | cytosol | 59.5 | 57.6 |
| TraesCS1D01G141500.1 | Wheat | cytosol | 56.75 | 55.23 |
| KRH30190 | Soybean | cytosol, nucleus, peroxisome, plastid | 47.66 | 54.92 |
| TraesCS1A01G142500.1 | Wheat | cytosol | 56.2 | 54.69 |
| HORVU1Hr1G037810.14 | Barley | cytosol, nucleus, peroxisome | 56.2 | 54.69 |
| GSMUA_Achr5P07410_001 | Banana | cytosol | 57.02 | 54.47 |
| TraesCS1B01G159200.1 | Wheat | cytosol | 55.92 | 54.42 |
| EER94139 | Sorghum | cytosol | 55.92 | 54.28 |
| CDY30187 | Canola | nucleus | 15.7 | 20.43 |
| CDX73881 | Canola | cytosol | 21.49 | 18.14 |
| CDY00732 | Canola | cytosol | 21.21 | 17.91 |
| CDY40770 | Canola | cytosol | 12.67 | 17.42 |
| CDX78316 | Canola | cytosol, mitochondrion, nucleus | 12.4 | 17.18 |
| CDY14024 | Canola | mitochondrion | 12.4 | 17.11 |
| CDX81078 | Canola | mitochondrion | 12.12 | 16.79 |
| CDY01012 | Canola | plastid | 22.04 | 16.74 |
| CDY16042 | Canola | cytosol | 20.94 | 16.41 |
| CDY26604 | Canola | cytosol | 20.94 | 16.41 |
| CDY46713 | Canola | nucleus | 16.53 | 16.39 |
| CDX70122 | Canola | cytosol | 21.76 | 16.36 |
| CDX98871 | Canola | cytosol | 21.76 | 16.36 |
| CDY08535 | Canola | plastid | 22.31 | 16.3 |
| CDX72539 | Canola | nucleus | 17.63 | 16.29 |
| CDY42760 | Canola | cytosol, plastid | 17.08 | 15.7 |
| CDY69629 | Canola | cytosol | 14.6 | 15.59 |
| CDY39144 | Canola | nucleus, plastid | 16.25 | 15.36 |
| CDX82667 | Canola | nucleus, plastid | 16.25 | 15.36 |
| CDX94383 | Canola | cytosol | 16.25 | 14.82 |
| CDX89369 | Canola | cytosol, plastid | 16.25 | 14.82 |
| CDY48988 | Canola | cytosol | 19.28 | 14.8 |
| CDX92748 | Canola | cytosol, plasma membrane, plastid | 14.88 | 14.44 |
| CDY66405 | Canola | cytosol | 18.73 | 13.6 |
| CDY07843 | Canola | nucleus | 18.73 | 13.6 |
| CDY40632 | Canola | nucleus | 20.39 | 13.58 |
| CDX75505 | Canola | cytosol | 20.11 | 13.52 |
| CDX69142 | Canola | cytosol | 19.83 | 13.24 |
| CDY30364 | Canola | cytosol | 18.46 | 13.11 |
| CDY26809 | Canola | nucleus | 18.73 | 12.73 |
| CDY56828 | Canola | nucleus | 17.91 | 11.11 |
| CDX97667 | Canola | nucleus | 17.36 | 10.77 |
Protein Annotations
| Gene3D:3.10.20.90 | Gene3D:3.80.10.10 | MapMan:35.1 | EnsemblPlants:CDX97851 | ProteinID:CDX97851 | ProteinID:CDX97851.1 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | EnsemblPlantsGene:GSBRNA2T00105175001 | InterPro:IPR000626 | InterPro:IPR001611 |
| InterPro:IPR032675 | InterPro:LRR_dom_sf | InterPro:Leu-rich_rpt | InterPro:Leu-rich_rpt_typical-subtyp | PFAM:PF00240 | PFAM:PF13855 |
| PFscan:PS50053 | PFscan:PS51450 | PANTHER:PTHR45377 | SMART:SM00213 | SMART:SM00364 | SMART:SM00369 |
| SUPFAM:SSF52058 | SUPFAM:SSF54236 | UniParc:UPI0004EEE893 | InterPro:Ubiquitin-like_domsf | InterPro:Ubiquitin_dom | SEG:seg |
Description
BnaC04g40880D
Coordinates
chrLK031901:-:992425..994306
Molecular Weight (calculated)
40024.6 Da
IEP (calculated)
8.493
GRAVY (calculated)
-0.172
Length
363 amino acids
Sequence
(BLAST)
(BLAST)
001: MGESTVKLTI KFGGRSIPLS VSPDATTKEL KSLLQPITNV LPRGQKLIFK GKVLVETSTL KQSLVGDGAK IMLMASQGLH QGEGPVLKEA STRPISRTVV
101: DQNKPGLVVD KNRADRWKAT GVIALAQANL KEIPEEVWEC GSAARVLDVS ENFIREVPVR ISSFVSMHKL FLQGNGLSDE SIQWEGIASL KRLMLLSISH
201: NNLTVLPSEV GSLTSLRQLD VANNKLTSLP NEIGLLTQLE IFKANNNRIT SLPESIGDCS FLMEVDLSAN MISELPETVT KLRKLKTLEL NNTGLTNLPS
301: VLFKMCLQLS TLGLHNTEIT VESLRQLEGW GEFDERRRTK HQKQIDFRVV GSGQFDEGAD KSW
101: DQNKPGLVVD KNRADRWKAT GVIALAQANL KEIPEEVWEC GSAARVLDVS ENFIREVPVR ISSFVSMHKL FLQGNGLSDE SIQWEGIASL KRLMLLSISH
201: NNLTVLPSEV GSLTSLRQLD VANNKLTSLP NEIGLLTQLE IFKANNNRIT SLPESIGDCS FLMEVDLSAN MISELPETVT KLRKLKTLEL NNTGLTNLPS
301: VLFKMCLQLS TLGLHNTEIT VESLRQLEGW GEFDERRRTK HQKQIDFRVV GSGQFDEGAD KSW
001: MELEDPTMAD STIKLTVKFG GKSIPLSVSP DCTVKDLKSQ LQPITNVLPR GQKLIFKGKV LVETSTLKQS DVGSGAKLML MASQGLHQGE GPILKEASIR
101: PISRTVVSDK VDQRKPSVLV DKNRTDRWKA TGVIALAQAN LKEIPEEVWD CGSGVRVLDI SENFIKEVPA KISSFGSMQK LFLQGNGLSD ESIQWEGIAS
201: LKRLMLLSIS HNNLTVLPSA MGSLTSLRQL DVTNNKLTSL PNELGLLTQL EILKANNNRI TSLPESIGNC SFLMEVDLSA NIISELPETF TKLRNLKTLE
301: LNNTGLKTLP SALFKMCLQL STLGLHNTEI TVEFLRQFEG YDDFDERRRT KHQKQLDFRV VGSGQFDEGA DKSW
101: PISRTVVSDK VDQRKPSVLV DKNRTDRWKA TGVIALAQAN LKEIPEEVWD CGSGVRVLDI SENFIKEVPA KISSFGSMQK LFLQGNGLSD ESIQWEGIAS
201: LKRLMLLSIS HNNLTVLPSA MGSLTSLRQL DVTNNKLTSL PNELGLLTQL EILKANNNRI TSLPESIGNC SFLMEVDLSA NIISELPETF TKLRNLKTLE
301: LNNTGLKTLP SALFKMCLQL STLGLHNTEI TVEFLRQFEG YDDFDERRRT KHQKQLDFRV VGSGQFDEGA DKSW
Arabidopsis Description
LRR repeats and ubiquitin-like domain-containing protein At2g30105 [Source:UniProtKB/Swiss-Prot;Acc:P0C895]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.