CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, nucleus, cytosol

Predictor Summary:

plastid 3
cytosol 1
nucleus 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG98234	Soybean	cytosol	88.57	74.4
VIT_06s0004g07050.t01	Wine grape	cytosol, plastid	58.73	48.68
CDY29703	Canola	cytosol	55.56	48.21
Bra021606.1-P	Field mustard	cytosol	54.92	47.66
CDX97851	Canola	cytosol	54.92	47.66
PGSC0003DMT400052945	Potato	nucleus	56.19	47.07
AT2G30105.1	Thale cress	cytosol	55.87	47.06
Solyc06g007250.2.1	Tomato	cytosol	55.56	46.67
GSMUA_Achr5P07410_001	Banana	cytosol	53.97	44.74
EER94139	Sorghum	cytosol	51.43	43.32
TraesCS1D01G141500.1	Wheat	cytosol	49.84	42.09
TraesCS1B01G159200.1	Wheat	cytosol	49.52	41.82
TraesCS1A01G142500.1	Wheat	cytosol	49.52	41.82
HORVU1Hr1G037810.14	Barley	cytosol, nucleus, peroxisome	49.21	41.55
KRH54661	Soybean	cytosol	12.06	14.56
KRH63260	Soybean	cytosol	12.06	14.56
KRH02753	Soybean	cytosol	15.87	13.89
KRH37361	Soybean	cytosol	15.56	13.8
KRH74520	Soybean	cytosol	20.0	13.67
KRH12356	Soybean	cytosol	15.56	13.5
KRH63625	Soybean	nucleus	20.95	12.87
KRH57134	Soybean	plastid	19.68	12.13
KRH04326	Soybean	cytosol	17.78	10.81
KRH07815	Soybean	cytosol	18.1	10.4
KRH28950	Soybean	cytosol	18.41	10.23
KRH76512	Soybean	nucleus	18.41	10.1
KRH39397	Soybean	nucleus	17.46	9.98
KRH58211	Soybean	mitochondrion	7.3	9.75
KRH22120	Soybean	cytosol	16.19	8.75
KRH27219	Soybean	cytosol	16.19	8.7

Protein Annotations

Gene3D:3.10.20.90	Gene3D:3.80.10.10	MapMan:35.1	UniProt:A0A0R0HI53	EMBL:ACUP02006888	EnsemblPlantsGene:GLYMA_11G166200
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:IPR001611	InterPro:IPR032675	EnsemblPlants:KRH30190	ProteinID:KRH30190	ProteinID:KRH30190.1	InterPro:LRR_dom_sf
InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_typical-subtyp	PFAM:PF13855	PFscan:PS51450	PANTHER:PTHR45377	SMART:SM00369
SUPFAM:SSF52058	SUPFAM:SSF54236	UniParc:UPI0006EDB5BA	InterPro:Ubiquitin-like_domsf	SEG:seg	:

Description

hypothetical protein

Coordinates

chr11:-:15951003..15963149

Molecular Weight (calculated)

35211.3 Da

IEP (calculated)

9.834

GRAVY (calculated)

-0.386

Length

315 amino acids

Sequence
(BLAST)

001: MEANSGASEP NSNATIITIN VKFGGVSIPI SISPHLTING FKSLLLPSTN VLPRGQKLIF KDATDGPVWK KAQVVPKSRK DDSGSNNDMK KIPVKNRMER
101: WKATGVVALS ECNLEVIPDE VWVCGSSARV LDCNNNSITD VPDEIARLTG LDKLFINANE IVDKSIRWEG LTTLKYLTVL SLNHNNLTTL SSTLGSLTSL
201: RELHVSNNKL SGLPNEIRHL TQLEVLRANN NRLFSKKNKA LYLGNTRMKS LPSKLFKTCL QLSTLDLHNT KITIDLLRRF EGWDNFDECQ RSKHQKQIDF
301: RVGVSRDFDE GVDKN

Best Arabidopsis Sequence Match ( AT2G30105.1 )
(BLAST)

001: MELEDPTMAD STIKLTVKFG GKSIPLSVSP DCTVKDLKSQ LQPITNVLPR GQKLIFKGKV LVETSTLKQS DVGSGAKLML MASQGLHQGE GPILKEASIR
101: PISRTVVSDK VDQRKPSVLV DKNRTDRWKA TGVIALAQAN LKEIPEEVWD CGSGVRVLDI SENFIKEVPA KISSFGSMQK LFLQGNGLSD ESIQWEGIAS
201: LKRLMLLSIS HNNLTVLPSA MGSLTSLRQL DVTNNKLTSL PNELGLLTQL EILKANNNRI TSLPESIGNC SFLMEVDLSA NIISELPETF TKLRNLKTLE
301: LNNTGLKTLP SALFKMCLQL STLGLHNTEI TVEFLRQFEG YDDFDERRRT KHQKQLDFRV VGSGQFDEGA DKSW

Arabidopsis Description

LRR repeats and ubiquitin-like domain-containing protein At2g30105 [Source:UniProtKB/Swiss-Prot;Acc:P0C895]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.