Factsheet for Bra021606.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 2
extracellular 1
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY29703	Canola	cytosol	97.25	97.25
CDX97851	Canola	cytosol	96.69	96.69
AT2G30105.1	Thale cress	cytosol	87.05	84.49
VIT_06s0004g07050.t01	Wine grape	cytosol, plastid	62.26	59.47
PGSC0003DMT400052945	Potato	nucleus	60.33	58.24
Solyc06g007250.2.1	Tomato	cytosol	59.78	57.87
KRG98234	Soybean	cytosol	59.78	57.87
TraesCS1D01G141500.1	Wheat	cytosol	57.02	55.5
TraesCS1A01G142500.1	Wheat	cytosol	56.47	54.96
HORVU1Hr1G037810.14	Barley	cytosol, nucleus, peroxisome	56.47	54.96
KRH30190	Soybean	cytosol, nucleus, peroxisome, plastid	47.66	54.92
TraesCS1B01G159200.1	Wheat	cytosol	56.2	54.69
EER94139	Sorghum	cytosol	56.2	54.55
GSMUA_Achr5P07410_001	Banana	cytosol	56.75	54.21
Bra028680.1-P	Field mustard	cytosol	12.67	17.42
Bra005960.1-P	Field mustard	cytosol, mitochondrion, nucleus	12.4	17.18
Bra024119.1-P	Field mustard	cytosol	16.53	16.39
Bra026944.1-P	Field mustard	cytosol	20.66	16.2
Bra034849.1-P	Field mustard	plastid	22.04	16.1
Bra019126.1-P	Field mustard	cytosol, plastid	17.08	15.7
Bra001399.1-P	Field mustard	plastid	21.49	15.66
Bra009140.1-P	Field mustard	cytosol	21.49	15.48
Bra032935.1-P	Field mustard	plastid	19.01	15.47
Bra038857.1-P	Field mustard	nucleus, plastid	16.25	15.36
Bra013944.1-P	Field mustard	cytosol, plastid	16.53	15.08
Bra011617.1-P	Field mustard	cytosol	17.91	14.22
Bra024514.1-P	Field mustard	cytosol	18.73	13.6
Bra017712.1-P	Field mustard	nucleus	20.39	13.58
Bra037271.1-P	Field mustard	cytosol	18.46	13.01
Bra027245.1-P	Field mustard	nucleus	18.18	11.28
Bra034850.1-P	Field mustard	nucleus	1.38	7.94

Protein Annotations

Gene3D:3.10.20.90	Gene3D:3.80.10.10	MapMan:35.1	EnsemblPlantsGene:Bra021606	EnsemblPlants:Bra021606.1	EnsemblPlants:Bra021606.1-P
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR000626	InterPro:IPR001611	InterPro:IPR032675
InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_typical-subtyp	UniProt:M4DYL0	PFAM:PF00240	PFAM:PF13855
PFscan:PS50053	PFscan:PS51450	PANTHER:PTHR45377	SMART:SM00213	SMART:SM00364	SMART:SM00369
SUPFAM:SSF52058	SUPFAM:SSF54236	UniParc:UPI0002544421	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_dom	SEG:seg

Description

AT2G30100 (E=8e-169) | ubiquitin family protein

Coordinates

chrA04:+:13372209..13373930

Molecular Weight (calculated)

39966.4 Da

IEP (calculated)

8.858

GRAVY (calculated)

-0.175

Length

363 amino acids

Sequence
(BLAST)

001: MAESTIKLTI KFGGRSIPLS VSHDATTKEL KSLLQPITNV LPRGQKLIFK GKVLGETSTL KQSLVGDGAK IMLMASQGLH QGEGPVLKEA STRPISRTVV
101: DKAKPGLVVD KNRADRWKAT GVIALAQANL KEIPEEVWEC GSAARVLDVS ENFIREVPAR ISSFTSIHKL FLQGNGLSDE SIQWEGIASL KRLMLLSISH
201: NNLSVLPSEV GSLTSLRQLD VANNKLTSLP NEIGLLTQLE IFKANNNRIT SLPESIGDCS FLMEVDLSAN MISELPETVT KLRKLKTLEL NNTGLTTLPS
301: VLFKMCLQLS TLGLHNTEIT VESLRQLEGW SEFDERRRTK HQKQIDFRVV GSGQFDEGAD KSW

Best Arabidopsis Sequence Match ( AT2G30105.1 )
(BLAST)

001: MELEDPTMAD STIKLTVKFG GKSIPLSVSP DCTVKDLKSQ LQPITNVLPR GQKLIFKGKV LVETSTLKQS DVGSGAKLML MASQGLHQGE GPILKEASIR
101: PISRTVVSDK VDQRKPSVLV DKNRTDRWKA TGVIALAQAN LKEIPEEVWD CGSGVRVLDI SENFIKEVPA KISSFGSMQK LFLQGNGLSD ESIQWEGIAS
201: LKRLMLLSIS HNNLTVLPSA MGSLTSLRQL DVTNNKLTSL PNELGLLTQL EILKANNNRI TSLPESIGNC SFLMEVDLSA NIISELPETF TKLRNLKTLE
301: LNNTGLKTLP SALFKMCLQL STLGLHNTEI TVEFLRQFEG YDDFDERRRT KHQKQLDFRV VGSGQFDEGA DKSW

Arabidopsis Description

LRR repeats and ubiquitin-like domain-containing protein At2g30105 [Source:UniProtKB/Swiss-Prot;Acc:P0C895]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.