Factsheet for PGSC0003DMT400052945

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
extracellular 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, extracellular, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	extracellular
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g007250.2.1	Tomato	cytosol	96.28	96.53
VIT_06s0004g07050.t01	Wine grape	cytosol, plastid	65.43	64.74
KRG98234	Soybean	cytosol	60.64	60.8
CDY29703	Canola	cytosol	58.51	60.61
Bra021606.1-P	Field mustard	cytosol	58.24	60.33
CDX97851	Canola	cytosol	57.98	60.06
GSMUA_Achr5P07410_001	Banana	cytosol	60.37	59.74
AT2G30105.1	Thale cress	cytosol	59.04	59.36
TraesCS1D01G141500.1	Wheat	cytosol	57.18	57.64
HORVU1Hr1G037810.14	Barley	cytosol, nucleus, peroxisome	56.91	57.37
TraesCS1A01G142500.1	Wheat	cytosol	56.91	57.37
EER94139	Sorghum	cytosol	56.91	57.22
TraesCS1B01G159200.1	Wheat	cytosol	56.65	57.1
KRH30190	Soybean	cytosol, nucleus, peroxisome, plastid	47.07	56.19
PGSC0003DMT400013776	Potato	cytosol	12.23	20.26
PGSC0003DMT400063105	Potato	cytosol	12.23	17.56
PGSC0003DMT400052889	Potato	cytosol	18.88	16.63
PGSC0003DMT400016538	Potato	mitochondrion	15.69	16.25
PGSC0003DMT400046655	Potato	cytosol	22.61	16.16
PGSC0003DMT400059678	Potato	nucleus	20.74	13.71
PGSC0003DMT400035497	Potato	cytosol	20.74	13.64

Protein Annotations

EntrezGene:102601234	Gene3D:3.10.20.90	Gene3D:3.80.10.10	MapMan:35.1	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR000626	InterPro:IPR001611	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt
InterPro:Leu-rich_rpt_typical-subtyp	UniProt:M1BU62	PFAM:PF00240	PFAM:PF13855	EnsemblPlantsGene:PGSC0003DMG400020546	PGSC:PGSC0003DMG400020546
EnsemblPlants:PGSC0003DMT400052945	PFscan:PS50053	PFscan:PS51450	PANTHER:PTHR45377	SMART:SM00213	SMART:SM00364
SMART:SM00369	SUPFAM:SSF52058	SUPFAM:SSF54236	UniParc:UPI0002959455	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_dom
RefSeq:XP_006344060.1	:	:	:	:	:

Description

Ubiquitin family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400020546]

Coordinates

chr6:-:3101549..3107994

Molecular Weight (calculated)

41194.9 Da

IEP (calculated)

7.254

GRAVY (calculated)

-0.205

Length

376 amino acids

Sequence
(BLAST)

001: MEKEGKSDAD NRSTITVNVK FSGRSIPVEI SDESTVKHLK SLLQPLTNVL SRGQKLIFKG KVLVDEITLK SSEVGNGAKI MLMASQGLHQ GDGPIRKEAS
101: NLPTARRMPE AMRPKRDVPQ VPVVKSQLER WKATGVVALS ECNLKVLPDE VLTCGPSARV LDLSHNAIQH LPAAINSLSS LQKLILNGNE IMDNSLSWEE
201: LASLKSLMVI SLNQNHIATL PPEVGTLTGL RQLHIAHNEL TGLPSEIGLL TSLEVLKVNN NRIRSIPESI GGCVSLIEVD LSSNLLVELP ETISKLKDLK
301: ALYLGNNGLK SLPSSIFKQC CQLSTLDLHG TEITIDVICQ IEGWENFDER RRSKHQKQLD FRVSSSGKFD EGADQS

Best Arabidopsis Sequence Match ( AT2G30105.1 )
(BLAST)

001: MELEDPTMAD STIKLTVKFG GKSIPLSVSP DCTVKDLKSQ LQPITNVLPR GQKLIFKGKV LVETSTLKQS DVGSGAKLML MASQGLHQGE GPILKEASIR
101: PISRTVVSDK VDQRKPSVLV DKNRTDRWKA TGVIALAQAN LKEIPEEVWD CGSGVRVLDI SENFIKEVPA KISSFGSMQK LFLQGNGLSD ESIQWEGIAS
201: LKRLMLLSIS HNNLTVLPSA MGSLTSLRQL DVTNNKLTSL PNELGLLTQL EILKANNNRI TSLPESIGNC SFLMEVDLSA NIISELPETF TKLRNLKTLE
301: LNNTGLKTLP SALFKMCLQL STLGLHNTEI TVEFLRQFEG YDDFDERRRT KHQKQLDFRV VGSGQFDEGA DKSW

Arabidopsis Description

LRR repeats and ubiquitin-like domain-containing protein At2g30105 [Source:UniProtKB/Swiss-Prot;Acc:P0C895]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.