Factsheet for AT2G30105.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
extracellular 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX97851	Canola	cytosol	84.76	87.33
Bra021606.1-P	Field mustard	cytosol	84.49	87.05
CDY29703	Canola	cytosol	84.22	86.78
VIT_06s0004g07050.t01	Wine grape	cytosol, plastid	62.83	61.84
KRG98234	Soybean	cytosol	60.43	60.27
PGSC0003DMT400052945	Potato	nucleus	59.36	59.04
Solyc06g007250.2.1	Tomato	cytosol	58.56	58.4
GSMUA_Achr5P07410_001	Banana	cytosol	56.95	56.05
KRH30190	Soybean	cytosol, nucleus, peroxisome, plastid	47.06	55.87
EER94139	Sorghum	cytosol	55.08	55.08
TraesCS1D01G141500.1	Wheat	cytosol	54.55	54.69
TraesCS1B01G159200.1	Wheat	cytosol	53.74	53.89
TraesCS1A01G142500.1	Wheat	cytosol	53.74	53.89
HORVU1Hr1G037810.14	Barley	cytosol, nucleus, peroxisome	53.48	53.62
AT1G12970.1	Thale cress	cytosol	21.66	17.46
AT5G05850.1	Thale cress	plastid	23.26	17.19
AT5G07910.1	Thale cress	cytosol	12.03	17.18
AT3G11330.1	Thale cress	plastid	22.73	17.03
AT3G26500.1	Thale cress	cytosol	20.86	16.56
AT4G29880.1	Thale cress	nucleus	15.78	15.82
AT4G26050.1	Thale cress	cytosol	15.78	15.4
AT2G19330.1	Thale cress	nucleus, plastid	15.24	15.0
AT4G35470.1	Thale cress	nucleus	18.98	12.93
AT2G17440.1	Thale cress	cytosol	17.91	12.74
AT3G15410.2	Thale cress	cytosol, mitochondrion, nucleus	18.18	11.53

Protein Annotations

EntrezGene:10723124	PDB:2KD0	Gene3D:3.10.20.90	Gene3D:3.80.10.10	MapMan:35.1	ProteinID:AAC16962.1
ProteinID:AEC08345.2	ArrayExpress:AT2G30105	EnsemblPlantsGene:AT2G30105	RefSeq:AT2G30105	TAIR:AT2G30105	RefSeq:AT2G30105-TAIR-G
EnsemblPlants:AT2G30105.1	TAIR:AT2G30105.1	Unigene:At.75197	EMBL:BX819490	EMBL:BX821459	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR000626	InterPro:IPR001611	InterPro:IPR032675	InterPro:LRR_dom_sf
InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_typical-subtyp	RefSeq:NP_001189636.2	UniProt:P0C895	PFAM:PF00240	PFAM:PF13855
PO:PO:0000293	PFscan:PS50053	PFscan:PS51450	PANTHER:PTHR45377	SMART:SM00213	SMART:SM00364
SMART:SM00369	SUPFAM:SSF52058	SUPFAM:SSF54236	UniParc:UPI000186C985	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_dom

Description

LRR repeats and ubiquitin-like domain-containing protein At2g30105 [Source:UniProtKB/Swiss-Prot;Acc:P0C895]

Coordinates

chr2:+:12849718..12852092

Molecular Weight (calculated)

41340.1 Da

IEP (calculated)

7.963

GRAVY (calculated)

-0.224

Length

374 amino acids

Sequence
(BLAST)

001: MELEDPTMAD STIKLTVKFG GKSIPLSVSP DCTVKDLKSQ LQPITNVLPR GQKLIFKGKV LVETSTLKQS DVGSGAKLML MASQGLHQGE GPILKEASIR
101: PISRTVVSDK VDQRKPSVLV DKNRTDRWKA TGVIALAQAN LKEIPEEVWD CGSGVRVLDI SENFIKEVPA KISSFGSMQK LFLQGNGLSD ESIQWEGIAS
201: LKRLMLLSIS HNNLTVLPSA MGSLTSLRQL DVTNNKLTSL PNELGLLTQL EILKANNNRI TSLPESIGNC SFLMEVDLSA NIISELPETF TKLRNLKTLE
301: LNNTGLKTLP SALFKMCLQL STLGLHNTEI TVEFLRQFEG YDDFDERRRT KHQKQLDFRV VGSGQFDEGA DKSW

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.