Factsheet for TraesCS1A01G142500.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

mitochondrion 1
cytosol 2
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G141500.1	Wheat	cytosol	98.39	98.39
TraesCS1B01G159200.1	Wheat	cytosol	98.39	98.39
HORVU1Hr1G037810.14	Barley	cytosol, nucleus, peroxisome	97.32	97.32
EER94139	Sorghum	cytosol	76.68	76.47
GSMUA_Achr5P07410_001	Banana	cytosol	64.34	63.16
VIT_06s0004g07050.t01	Wine grape	cytosol, plastid	58.45	57.37
PGSC0003DMT400052945	Potato	nucleus	57.37	56.91
Solyc06g007250.2.1	Tomato	cytosol	57.1	56.8
CDY29703	Canola	cytosol	54.96	56.47
Bra021606.1-P	Field mustard	cytosol	54.96	56.47
CDX97851	Canola	cytosol	54.69	56.2
KRG98234	Soybean	cytosol	54.16	53.87
AT2G30105.1	Thale cress	cytosol	53.89	53.74
KRH30190	Soybean	cytosol, nucleus, peroxisome, plastid	41.82	49.52
TraesCS2A01G432800.1	Wheat	cytosol, nucleus, plastid	17.43	17.81
TraesCS2A01G327100.1	Wheat	cytosol, plastid	23.06	17.1
TraesCS1A01G190500.1	Wheat	cytosol	20.91	14.61
TraesCS7A01G247900.2	Wheat	cytosol	21.18	13.86
TraesCS4A01G055400.1	Wheat	nucleus	11.26	12.39
TraesCS6A01G410200.1	Wheat	cytosol, plasma membrane, plastid	18.77	10.8

Protein Annotations

Gene3D:3.10.20.90	Gene3D:3.80.10.10	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR000626	InterPro:IPR001611	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_typical-subtyp
PFAM:PF00240	PFAM:PF13855	PFscan:PS50053	PFscan:PS51450	PANTHER:PTHR45377	SMART:SM00213
SMART:SM00364	SMART:SM00369	SUPFAM:SSF52058	SUPFAM:SSF54236	EnsemblPlantsGene:TraesCS1A01G142500	EnsemblPlants:TraesCS1A01G142500.1
InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_dom	TIGR:cd01812	:	:	:

Description

No Description!

Coordinates

chr1A:-:243619641..243624532

Molecular Weight (calculated)

40382.7 Da

IEP (calculated)

7.789

GRAVY (calculated)

-0.130

Length

373 amino acids

Sequence
(BLAST)

001: MESSPPTITV QVKFAGRTIP VELPTSASTA ELKLLLQPLT NVLPRGQKLI CKGKVLADAA SLSSMQVGDG SKVMLIASQG LHQGEGPITK NSSGLAPSAK
101: RTSNVKDNQT LKPEIISKSR AERWKITGVI ALSGSSLKAV PEEVWDCGSS IRVLDVCNNS IEAIPQKIAA VKSLNKLLLT ANDISDGGIS WEGLSCVDTL
201: TVLSLSQNRL VTLPPSLGTL TFLRELRIAN NMLGSLPVEI GLLKQLEILI ANNNRITSLP SSIGDCESLF EVDLSSNLLA ELPKACGNLH NLKALHLRNN
301: GLNSLPPTLF KKCWRLTTLD LHGTGITNDI LRQLEGWEEF DERRRQKYQK QLDFHVGSSG VFDEGADDDN RHA

Best Arabidopsis Sequence Match ( AT2G30105.1 )
(BLAST)

001: MELEDPTMAD STIKLTVKFG GKSIPLSVSP DCTVKDLKSQ LQPITNVLPR GQKLIFKGKV LVETSTLKQS DVGSGAKLML MASQGLHQGE GPILKEASIR
101: PISRTVVSDK VDQRKPSVLV DKNRTDRWKA TGVIALAQAN LKEIPEEVWD CGSGVRVLDI SENFIKEVPA KISSFGSMQK LFLQGNGLSD ESIQWEGIAS
201: LKRLMLLSIS HNNLTVLPSA MGSLTSLRQL DVTNNKLTSL PNELGLLTQL EILKANNNRI TSLPESIGNC SFLMEVDLSA NIISELPETF TKLRNLKTLE
301: LNNTGLKTLP SALFKMCLQL STLGLHNTEI TVEFLRQFEG YDDFDERRRT KHQKQLDFRV VGSGQFDEGA DKSW

Arabidopsis Description

LRR repeats and ubiquitin-like domain-containing protein At2g30105 [Source:UniProtKB/Swiss-Prot;Acc:P0C895]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.