CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
mitochondrion 2
cytosol 2
extracellular 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G141500.1	Wheat	cytosol	77.01	77.21
TraesCS1B01G159200.1	Wheat	cytosol	76.74	76.94
TraesCS1A01G142500.1	Wheat	cytosol	76.47	76.68
HORVU1Hr1G037810.14	Barley	cytosol, nucleus, peroxisome	75.94	76.14
GSMUA_Achr5P07410_001	Banana	cytosol	64.17	63.16
VIT_06s0004g07050.t01	Wine grape	cytosol, plastid	58.56	57.63
Solyc06g007250.2.1	Tomato	cytosol	57.22	57.07
PGSC0003DMT400052945	Potato	nucleus	57.22	56.91
CDY29703	Canola	cytosol	54.55	56.2
Bra021606.1-P	Field mustard	cytosol	54.55	56.2
CDX97851	Canola	cytosol	54.28	55.92
KRG98234	Soybean	cytosol	55.88	55.73
AT2G30105.1	Thale cress	cytosol	55.08	55.08
KRH30190	Soybean	cytosol, nucleus, peroxisome, plastid	43.32	51.43
EES10994	Sorghum	plastid	24.6	18.0
EER95291	Sorghum	cytosol	12.03	17.18
EES05350	Sorghum	plastid	22.73	16.9
KXG27059	Sorghum	cytosol, nucleus, plastid	16.31	16.8
KXG38871	Sorghum	cytosol	22.19	15.43
EES14257	Sorghum	nucleus	19.52	12.63
EES07794	Sorghum	cytosol	19.52	12.46

Protein Annotations

Gene3D:3.10.20.90	Gene3D:3.80.10.10	MapMan:35.1	EntrezGene:8070533	UniProt:C5WZI5	EnsemblPlants:EER94139
ProteinID:EER94139	ProteinID:EER94139.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR000626
InterPro:IPR001611	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_typical-subtyp	PFAM:PF00240
PFAM:PF13855	PFscan:PS50053	PFscan:PS51450	PANTHER:PTHR45377	SMART:SM00213	SMART:SM00364
SMART:SM00369	EnsemblPlantsGene:SORBI_3001G231500	SUPFAM:SSF52058	SUPFAM:SSF54236	unigene:Sbi.2020	UniParc:UPI0001A82949
InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_dom	RefSeq:XP_002467141.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr1:-:22342904..22347766

Molecular Weight (calculated)

41082.5 Da

IEP (calculated)

8.011

GRAVY (calculated)

-0.243

Length

374 amino acids

Sequence
(BLAST)

001: MEAAPTTITV QVKFAGRTIP VEVPAAASGA ELKRLLQPLT NVLPRGQKLI CKGKVLEDAA SLSSMQVVDG SKVMLIASQG LHQGDGPITK NSNSSATTVR
101: RPSNAKENQA QKPEAVVTKS RSERWKLTGV VALHDCDLKV VPEEVWDCGP SIRILDINNN SIKEIPHKIS ALKSLNKLLL TANDIADDSI CWEGLSCLQK
201: LLNLSLSKNR LVSLPSTLGL LTSLRELRVA NNRLDNLPIE IGQLKHLQIL IASNNRITSL PSSIGDCESL AEVDLSSNLL TELPEAFGYL CNLKVLHIRN
301: NGLTSLPATL FKKCSQLITL DLHGTEITND VLRQVEGWEE FDERRRQKHQ KQLDFRVGSS GVFDEGADDD NRRR

Best Arabidopsis Sequence Match ( AT2G30105.1 )
(BLAST)

001: MELEDPTMAD STIKLTVKFG GKSIPLSVSP DCTVKDLKSQ LQPITNVLPR GQKLIFKGKV LVETSTLKQS DVGSGAKLML MASQGLHQGE GPILKEASIR
101: PISRTVVSDK VDQRKPSVLV DKNRTDRWKA TGVIALAQAN LKEIPEEVWD CGSGVRVLDI SENFIKEVPA KISSFGSMQK LFLQGNGLSD ESIQWEGIAS
201: LKRLMLLSIS HNNLTVLPSA MGSLTSLRQL DVTNNKLTSL PNELGLLTQL EILKANNNRI TSLPESIGNC SFLMEVDLSA NIISELPETF TKLRNLKTLE
301: LNNTGLKTLP SALFKMCLQL STLGLHNTEI TVEFLRQFEG YDDFDERRRT KHQKQLDFRV VGSGQFDEGA DKSW

Arabidopsis Description

LRR repeats and ubiquitin-like domain-containing protein At2g30105 [Source:UniProtKB/Swiss-Prot;Acc:P0C895]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.