Factsheet for HORVU1Hr1G037810.14

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

nucleus 2
mitochondrion 1
peroxisome 1
extracellular 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G141500.1	Wheat	cytosol	97.86	97.86
TraesCS1B01G159200.1	Wheat	cytosol	97.86	97.86
TraesCS1A01G142500.1	Wheat	cytosol	97.32	97.32
EER94139	Sorghum	cytosol	76.14	75.94
GSMUA_Achr5P07410_001	Banana	cytosol	63.81	62.63
VIT_06s0004g07050.t01	Wine grape	cytosol, plastid	58.18	57.11
PGSC0003DMT400052945	Potato	nucleus	57.37	56.91
Solyc06g007250.2.1	Tomato	cytosol	57.1	56.8
Bra021606.1-P	Field mustard	cytosol	54.96	56.47
CDY29703	Canola	cytosol	54.96	56.47
CDX97851	Canola	cytosol	54.69	56.2
KRG98234	Soybean	cytosol	53.89	53.6
AT2G30105.1	Thale cress	cytosol	53.62	53.48
KRH30190	Soybean	cytosol, nucleus, peroxisome, plastid	41.55	49.21
HORVU7Hr1G066320.3	Barley	cytosol	15.55	20.71
HORVU2Hr1G082540.6	Barley	cytosol, mitochondrion	20.11	18.29
HORVU4Hr1G068710.2	Barley	cytosol, mitochondrion, nucleus, plastid	12.33	17.56
HORVU6Hr1G093360.11	Barley	nucleus	17.16	17.25
HORVU2Hr1G101090.6	Barley	plastid	18.23	16.11
HORVU6Hr1G053210.1	Barley	cytosol, plastid	21.72	15.7
HORVU1Hr1G049900.1	Barley	cytosol, extracellular, mitochondrion, plastid	21.45	13.96
HORVU6Hr1G093540.7	Barley	cytosol	1.61	2.51

Protein Annotations

Gene3D:3.10.20.90	Gene3D:3.80.10.10	MapMan:35.1	EMBL:AK366694	EMBL:AK373582	UniProt:F2DS26
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:HORVU1Hr1G037810	EnsemblPlants:HORVU1Hr1G037810.14	InterPro:IPR000626
InterPro:IPR001611	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_typical-subtyp	PFAM:PF00240
PFAM:PF13855	PFscan:PS50053	PFscan:PS51450	PANTHER:PTHR45377	SMART:SM00213	SMART:SM00364
SMART:SM00369	SUPFAM:SSF52058	SUPFAM:SSF54236	UniParc:UPI00020074B5	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_dom

Description

Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2DS26]

Coordinates

chrchr1H:+:260667955..260673383

Molecular Weight (calculated)

40426.8 Da

IEP (calculated)

7.725

GRAVY (calculated)

-0.128

Length

373 amino acids

Sequence
(BLAST)

001: MESSPPTITV QVKFAGRTIP VELPTSASTA ELKLLLQPLT NVLTRGQRLI CKGKVLADAA SLSSMQVGDG SKVMLIASQG LHQGEGPITK NSSGLAPSAK
101: RTSNVKDNQT LKPEIISKSR AERWKITGVI ALSGSSLKAV PEEVWDCGSS IRVLDVCNNS IEAIPQRIAA LKSLNKLLLT ANDISDGGIC WEGLSCVDTL
201: TVLSLSQNRL VTLPPSLGTL TFLRELRIAN NMLGSLPVEI GLLKQLEILI ANNNRITSLP SSIGDCESLF EVDLSSNLLA ELPKACGNLH NLKTLHLRNN
301: GLNSLPPSLF KKCWRLTTLD LHGTGITNDI LRQMEGWEEF DERRRQKYQK QLDFRVGSSG VFDEGADDDN GHA

Best Arabidopsis Sequence Match ( AT2G30105.1 )
(BLAST)

001: MELEDPTMAD STIKLTVKFG GKSIPLSVSP DCTVKDLKSQ LQPITNVLPR GQKLIFKGKV LVETSTLKQS DVGSGAKLML MASQGLHQGE GPILKEASIR
101: PISRTVVSDK VDQRKPSVLV DKNRTDRWKA TGVIALAQAN LKEIPEEVWD CGSGVRVLDI SENFIKEVPA KISSFGSMQK LFLQGNGLSD ESIQWEGIAS
201: LKRLMLLSIS HNNLTVLPSA MGSLTSLRQL DVTNNKLTSL PNELGLLTQL EILKANNNRI TSLPESIGNC SFLMEVDLSA NIISELPETF TKLRNLKTLE
301: LNNTGLKTLP SALFKMCLQL STLGLHNTEI TVEFLRQFEG YDDFDERRRT KHQKQLDFRV VGSGQFDEGA DKSW

Arabidopsis Description

LRR repeats and ubiquitin-like domain-containing protein At2g30105 [Source:UniProtKB/Swiss-Prot;Acc:P0C895]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.