Factsheet for HORVU6Hr1G093360.11

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G393300.1	Wheat	cytosol	94.61	59.9
TraesCS6B01G456300.1	Wheat	cytosol	93.53	59.32
TraesCS6A01G410200.1	Wheat	cytosol, plasma membrane, plastid	95.96	54.94
EES07794	Sorghum	cytosol	83.83	53.07
Os02t0826600-01	Rice	cytosol	80.32	50.85
Zm00001d018525_P004	Maize	cytosol	83.83	49.84
GSMUA_Achr4P04360_001	Banana	cytosol	69.81	44.27
Bra027245.1-P	Field mustard	nucleus	66.04	41.88
KRH22120	Soybean	cytosol	65.77	41.85
AT3G15410.2	Thale cress	cytosol, mitochondrion, nucleus	66.31	41.69
KRH27219	Soybean	cytosol	65.5	41.47
VIT_19s0014g03000.t01	Wine grape	cytosol, mitochondrion	65.23	41.44
CDY56828	Canola	nucleus	65.23	41.37
CDX97667	Canola	nucleus	65.23	41.37
Solyc10g006930.2.1	Tomato	cytosol	62.8	39.9
HORVU7Hr1G066320.3	Barley	cytosol	17.79	23.57
HORVU4Hr1G068710.2	Barley	cytosol, mitochondrion, nucleus, plastid	16.44	23.28
HORVU2Hr1G082540.6	Barley	cytosol, mitochondrion	22.1	20.0
HORVU1Hr1G037810.14	Barley	cytosol, nucleus, peroxisome	17.25	17.16
HORVU2Hr1G101090.6	Barley	plastid	19.14	16.82
HORVU6Hr1G053210.1	Barley	cytosol, plastid	22.1	15.89
HORVU1Hr1G049900.1	Barley	cytosol, extracellular, mitochondrion, plastid	22.1	14.31
HORVU6Hr1G093540.7	Barley	cytosol	2.7	4.18

Protein Annotations

EnsemblPlants:HORVU6Hr1G093360.11	EnsemblPlantsGene:HORVU6Hr1G093360	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001611	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_typical-subtyp	ncoils:Coil
PANTHER:PTHR44126	PFAM:PF13855	PFscan:PS51450	SEG:seg	SMART:SM00364	SMART:SM00369
SUPFAM:SSF52058	UniParc:UPI000B47F43C	UniProt:A0A287V853	MapMan:35.1	:	:

Description

No Description!

Coordinates

chrchr6H:+:579494378..579498390

Molecular Weight (calculated)

40165.4 Da

IEP (calculated)

8.118

GRAVY (calculated)

-0.160

Length

371 amino acids

Sequence
(BLAST)

001: MERILKSARE SGSLNLSNRA LSDVPGEVYN NLDTGSLDDK WWEGVDLQKL ILAHNNLEVL REDLRNLSSL VVLNISHNQI SSLPAAIGDL PLLKSLDASF
101: NQIKLIPEEV GLASALVKAD FSNNCLTELP ASLGRCLNLS ELKASNNNIS RLPDELAGCC KLSKFDMEGN KLVLLPENMF TSWTLLTELN AAKNQLTTIP
201: ASIGALSKLV RMDLHQNKIT SIPSSIKGCS SLAEFYMGNN SLSTIPADIG MLSKLGTLDL HSNQLKEYPV GACKLKLSFL DLSNNALSGL PPELGTMTTL
301: RKLLLSGNPM RALRSSLVSG PTSTLMKYLR SRLSSDEEAS GSRTTPTKDD QISAARRLSA SSKRVNKGPS D

Best Arabidopsis Sequence Match ( AT3G15410.1 )
(BLAST)

001: MDRILKAART SGSLNLSNRS LKDVPTEVYQ CLETTGEGEN WWEAVDLQKL ILAHNDIEVL REDLKNLACL VVLNVSHNKL SQLPAAIGEL TAMKSLDVSF
101: NSISELPEQI GSAISLVKLD CSSNRLKELP DSIGRCLDLS DLKATNNQIS SLPEDMVNCS KLSKLDVEGN KLTALSENHI ASWTMLAELN ACKNMLGVLP
201: QNIGSLSRLI RLDLHQNKIS SVPPSIGGCS SLVEFYLGIN SLSTLPAEIG DLSRLGTLDL RSNQLKEYPV GACKLKLSYL DLSNNSLTGL HPELGNMTTL
301: RKLVLVGNPL RTLRSSLVNG PTAALLKYLR SRLSNSEETS ASTPTKENVI ASAARMSISS KELSLEGLNL SDVPSEVWES GEITKVNLSK NSIEELPAQL
401: STSVSLQTLI LSRNKIKDWP GAILKSLPNL MCLKLDNNPL NQIPLDGFQV VSGLQILDLS VNAVSFREHP KFCHLPQLRE LYLSRIQLSE VPEDILNLSN
501: LIILDLNQNS LQSIPKGIKN MTSLKHLDIS NNNISSLPPE LGLLEPTLEV LRLDGNPLRS IRRPILERGT KAVLNYLKDR LPDQ

Arabidopsis Description

Leucine-rich repeat (LRR) family protein [Source:UniProtKB/TrEMBL;Acc:F4IYR7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.