Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra027245.1-P | Field mustard | nucleus | 90.68 | 91.45 |
| CDX97667 | Canola | nucleus | 90.51 | 91.28 |
| CDY56828 | Canola | nucleus | 89.83 | 90.6 |
| VIT_19s0014g03000.t01 | Wine grape | cytosol, mitochondrion | 70.68 | 71.4 |
| KRH27219 | Soybean | cytosol | 70.85 | 71.33 |
| KRH22120 | Soybean | cytosol | 70.17 | 71.01 |
| Solyc10g006930.2.1 | Tomato | cytosol | 67.12 | 67.81 |
| GSMUA_Achr4P04360_001 | Banana | cytosol | 65.76 | 66.32 |
| HORVU6Hr1G093360.11 | Barley | nucleus | 41.69 | 66.31 |
| EES07794 | Sorghum | cytosol | 63.22 | 63.65 |
| TraesCS6D01G393300.1 | Wheat | cytosol | 62.71 | 63.14 |
| TraesCS6B01G456300.1 | Wheat | cytosol | 62.54 | 63.08 |
| Os02t0826600-01 | Rice | cytosol | 62.2 | 62.63 |
| Zm00001d018525_P004 | Maize | cytosol | 63.22 | 59.78 |
| TraesCS6A01G410200.1 | Wheat | cytosol, plasma membrane, plastid | 62.54 | 56.94 |
| AT5G07910.1 | Thale cress | cytosol | 12.03 | 27.1 |
| AT4G29880.1 | Thale cress | nucleus | 15.25 | 24.13 |
| AT4G26050.1 | Thale cress | cytosol | 15.59 | 24.02 |
| AT2G19330.1 | Thale cress | nucleus, plastid | 15.42 | 23.95 |
| AT5G05850.1 | Thale cress | plastid | 18.14 | 21.15 |
| AT3G11330.1 | Thale cress | plastid | 17.63 | 20.84 |
| AT1G12970.1 | Thale cress | cytosol | 15.76 | 20.04 |
| AT3G26500.1 | Thale cress | cytosol | 15.76 | 19.75 |
| AT2G17440.1 | Thale cress | cytosol | 17.46 | 19.58 |
| AT4G35470.1 | Thale cress | nucleus | 17.29 | 18.58 |
| AT2G30105.1 | Thale cress | cytosol | 11.53 | 18.18 |
Protein Annotations
| Gene3D:3.80.10.10 | MapMan:35.1 | EntrezGene:820780 | ProteinID:AEE75671.1 | ArrayExpress:AT3G15410 | EnsemblPlantsGene:AT3G15410 |
| RefSeq:AT3G15410 | TAIR:AT3G15410 | RefSeq:AT3G15410-TAIR-G | EnsemblPlants:AT3G15410.2 | TAIR:AT3G15410.2 | Unigene:At.20269 |
| UniProt:F4IYR7 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005623 |
| GO:GO:0005886 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016020 |
| InterPro:IPR001611 | InterPro:IPR032675 | InterPro:LRR_dom_sf | InterPro:Leu-rich_rpt | InterPro:Leu-rich_rpt_typical-subtyp | RefSeq:NP_001189901.1 |
| PFAM:PF00560 | PFAM:PF13855 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PRINTS:PR00019 |
| PFscan:PS51450 | PANTHER:PTHR44126 | SMART:SM00364 | SMART:SM00369 | SUPFAM:SSF52058 | UniParc:UPI0001E92DC2 |
| SEG:seg | : | : | : | : | : |
Description
Leucine-rich repeat (LRR) family protein [Source:UniProtKB/TrEMBL;Acc:F4IYR7]
Coordinates
chr3:+:5203292..5207559
Molecular Weight (calculated)
64853.5 Da
IEP (calculated)
5.945
GRAVY (calculated)
-0.109
Length
590 amino acids
Sequence
(BLAST)
(BLAST)
001: MDRILKAART SGSLNLSNRS LNFDPITWDV PTEVYQCLET TGEGENWWEA VDLQKLILAH NDIEVLREDL KNLACLVVLN VSHNKLSQLP AAIGELTAMK
101: SLDVSFNSIS ELPEQIGSAI SLVKLDCSSN RLKELPDSIG RCLDLSDLKA TNNQISSLPE DMVNCSKLSK LDVEGNKLTA LSENHIASWT MLAELNACKN
201: MLGVLPQNIG SLSRLIRLDL HQNKISSVPP SIGGCSSLVE FYLGINSLST LPAEIGDLSR LGTLDLRSNQ LKEYPVGACK LKLSYLDLSN NSLTGLHPEL
301: GNMTTLRKLV LVGNPLRTLR SSLVNGPTAA LLKYLRSRLS NSEETSASTP TKENVIASAA RMSISSKELS LEGLNLSDVP SEVWESGEIT KVNLSKNSIE
401: ELPAQLSTSV SLQTLILSRN KIKDWPGAIL KSLPNLMCLK LDNNPLNQIP LDGFQVVSGL QILDLSVNAV SFREHPKFCH LPQLRELYLS RIQLSEVPED
501: ILNLSNLIIL DLNQNSLQSI PKGIKNMTSL KHLDISNNNI SSLPPELGLL EPTLEVLRLD GNPLRSIRRP ILERGTKAVL NYLKDRLPDQ
101: SLDVSFNSIS ELPEQIGSAI SLVKLDCSSN RLKELPDSIG RCLDLSDLKA TNNQISSLPE DMVNCSKLSK LDVEGNKLTA LSENHIASWT MLAELNACKN
201: MLGVLPQNIG SLSRLIRLDL HQNKISSVPP SIGGCSSLVE FYLGINSLST LPAEIGDLSR LGTLDLRSNQ LKEYPVGACK LKLSYLDLSN NSLTGLHPEL
301: GNMTTLRKLV LVGNPLRTLR SSLVNGPTAA LLKYLRSRLS NSEETSASTP TKENVIASAA RMSISSKELS LEGLNLSDVP SEVWESGEIT KVNLSKNSIE
401: ELPAQLSTSV SLQTLILSRN KIKDWPGAIL KSLPNLMCLK LDNNPLNQIP LDGFQVVSGL QILDLSVNAV SFREHPKFCH LPQLRELYLS RIQLSEVPED
501: ILNLSNLIIL DLNQNSLQSI PKGIKNMTSL KHLDISNNNI SSLPPELGLL EPTLEVLRLD GNPLRSIRRP ILERGTKAVL NYLKDRLPDQ
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.