CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra027245.1-P	Field mustard	nucleus	96.92	96.92
CDX97667	Canola	nucleus	96.92	96.92
AT3G15410.2	Thale cress	cytosol, mitochondrion, nucleus	90.6	89.83
VIT_19s0014g03000.t01	Wine grape	cytosol, mitochondrion	71.79	71.92
KRH27219	Soybean	cytosol	70.94	70.82
KRH22120	Soybean	cytosol	70.26	70.5
Solyc10g006930.2.1	Tomato	cytosol	68.72	68.84
GSMUA_Achr4P04360_001	Banana	cytosol	66.15	66.15
HORVU6Hr1G093360.11	Barley	nucleus	41.37	65.23
EES07794	Sorghum	cytosol	63.59	63.48
TraesCS6D01G393300.1	Wheat	cytosol	63.25	63.14
Os02t0826600-01	Rice	cytosol	62.91	62.8
TraesCS6B01G456300.1	Wheat	cytosol	62.73	62.73
Zm00001d018525_P004	Maize	cytosol	63.93	59.94
TraesCS6A01G410200.1	Wheat	cytosol, plasma membrane, plastid	63.08	56.94
CDX78316	Canola	cytosol, mitochondrion, nucleus	12.99	29.01
CDX81078	Canola	mitochondrion	12.82	28.63
CDY14024	Canola	mitochondrion	12.82	28.52
CDY40770	Canola	cytosol	12.82	28.41
CDY30187	Canola	nucleus	12.14	25.45
CDX89369	Canola	cytosol, plastid	15.73	23.12
CDY46713	Canola	nucleus	14.19	22.68
CDX72539	Canola	nucleus	15.21	22.65
CDX94383	Canola	cytosol	15.21	22.36
CDX82667	Canola	nucleus, plastid	14.53	22.14
CDY39144	Canola	nucleus, plastid	14.53	22.14
CDX73881	Canola	cytosol	16.24	22.09
CDY00732	Canola	cytosol	16.24	22.09
CDY42760	Canola	cytosol, plastid	14.87	22.03
CDX92748	Canola	cytosol, plasma membrane, plastid	13.33	20.86
CDX98871	Canola	cytosol	17.09	20.7
CDX70122	Canola	cytosol	17.09	20.7
CDY26604	Canola	cytosol	16.07	20.3
CDY16042	Canola	cytosol	16.07	20.3
CDY48988	Canola	cytosol	15.73	19.45
CDY69629	Canola	cytosol	11.28	19.41
CDY01012	Canola	plastid	15.56	19.04
CDY66405	Canola	cytosol	16.24	19.0
CDY30364	Canola	cytosol	16.41	18.79
CDY07843	Canola	nucleus	15.9	18.6
CDY08535	Canola	plastid	15.73	18.51
CDY29703	Canola	cytosol	11.28	18.18
CDX97851	Canola	cytosol	11.11	17.91
CDY26809	Canola	nucleus	16.07	17.6
CDX69142	Canola	cytosol	16.07	17.28
CDX75505	Canola	cytosol	15.9	17.22
CDY40632	Canola	nucleus	15.56	16.7

Protein Annotations

Gene3D:3.80.10.10	MapMan:35.1	UniProt:A0A078J163	EnsemblPlants:CDY56828	ProteinID:CDY56828	ProteinID:CDY56828.1
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00020118001	InterPro:IPR001611	InterPro:IPR032675
InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_typical-subtyp	PFAM:PF00560	PFAM:PF13855	PRINTS:PR00019
PFscan:PS51450	PANTHER:PTHR44126	SMART:SM00364	SMART:SM00369	SUPFAM:SSF52058	UniParc:UPI0004EDD24D
SEG:seg	:	:	:	:	:

Description

BnaC05g37820DBnaC05g37820D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J163]

Coordinates

chrLK033521:-:44601..48801

Molecular Weight (calculated)

64034.6 Da

IEP (calculated)

6.634

GRAVY (calculated)

-0.109

Length

585 amino acids

Sequence
(BLAST)

001: MDRILKAART SGSLNLSNRS LREVPTEVYQ CLETTGEGEN WWEAVDLQKL ILAHNEIEVL REDLKNLACL VVLNVSHNKL SQLPAAIGEL TAMKSLDVSF
101: NSISELPEQI SSATSLVKLD CSSNRLKELP ESLGRCLDLS DLKASNNQIS SLHEDMANCS KLSKLDVEGN KLTALSERQI ASWTMLTELN ASKNMLVDLP
201: QNIGSLSRLI RLDLHQNKIS SIPPSIGGCS SLVEFYLGMN SLSTLPAEIG DLSRLGTLDL RSNQLKEYPV GGCKLKLSYL DLSNNSLTGL HPELGNMTTL
301: KKLVLVGNPL RTLRSTLVNG PTAALLKYLR SRLSNGEETS ASTPSKENVI ASAARMSIST KELSLEGLNL TAVPSQVWES GEITKVNLSK NSIEELPAQL
401: SSSASLQTLI LSRNKIKDWP GEILKSLPAL VCLKLDNNLL KQISLDGFQT VSGLQILDLS GNPASLGTGV HPKFSFLPQL QELYLSRVQL SEVPEDILNL
501: SNLLILDLSQ NLLQSIPKDI KKMTSLKHLD ISNNNISSLP PELGLLEPTL EVLRLDGNPL RSIRRPILER GTKAVLNYLK DRIPV

Best Arabidopsis Sequence Match ( AT3G15410.1 )
(BLAST)

001: MDRILKAART SGSLNLSNRS LKDVPTEVYQ CLETTGEGEN WWEAVDLQKL ILAHNDIEVL REDLKNLACL VVLNVSHNKL SQLPAAIGEL TAMKSLDVSF
101: NSISELPEQI GSAISLVKLD CSSNRLKELP DSIGRCLDLS DLKATNNQIS SLPEDMVNCS KLSKLDVEGN KLTALSENHI ASWTMLAELN ACKNMLGVLP
201: QNIGSLSRLI RLDLHQNKIS SVPPSIGGCS SLVEFYLGIN SLSTLPAEIG DLSRLGTLDL RSNQLKEYPV GACKLKLSYL DLSNNSLTGL HPELGNMTTL
301: RKLVLVGNPL RTLRSSLVNG PTAALLKYLR SRLSNSEETS ASTPTKENVI ASAARMSISS KELSLEGLNL SDVPSEVWES GEITKVNLSK NSIEELPAQL
401: STSVSLQTLI LSRNKIKDWP GAILKSLPNL MCLKLDNNPL NQIPLDGFQV VSGLQILDLS VNAVSFREHP KFCHLPQLRE LYLSRIQLSE VPEDILNLSN
501: LIILDLNQNS LQSIPKGIKN MTSLKHLDIS NNNISSLPPE LGLLEPTLEV LRLDGNPLRS IRRPILERGT KAVLNYLKDR LPDQ

Arabidopsis Description

Leucine-rich repeat (LRR) family protein [Source:UniProtKB/TrEMBL;Acc:F4IYR7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.