Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY30187 | Canola | nucleus | 73.5 | 96.42 |
| AT4G29880.1 | Thale cress | nucleus | 88.25 | 86.6 |
| CDY39144 | Canola | nucleus, plastid | 79.23 | 75.52 |
| CDX82667 | Canola | nucleus, plastid | 79.23 | 75.52 |
| VIT_11s0052g00390.t01 | Wine grape | cytosol | 56.56 | 67.21 |
| KRH02753 | Soybean | cytosol | 63.11 | 64.17 |
| GSMUA_AchrUn_... | Banana | nucleus | 54.92 | 59.12 |
| GSMUA_Achr1P23570_001 | Banana | nucleus | 54.92 | 58.6 |
| KRH37361 | Soybean | cytosol | 56.83 | 58.59 |
| PGSC0003DMT400016538 | Potato | mitochondrion | 57.1 | 57.58 |
| KRH12356 | Soybean | cytosol | 56.28 | 56.75 |
| Solyc12g017480.1.1 | Tomato | cytosol | 55.46 | 55.77 |
| Zm00001d002399_P001 | Maize | nucleus | 37.16 | 54.18 |
| CDY42760 | Canola | cytosol, plastid | 57.92 | 53.67 |
| CDX89369 | Canola | cytosol, plastid | 57.1 | 52.51 |
| CDX92748 | Canola | cytosol, plasma membrane, plastid | 53.55 | 52.41 |
| CDX94383 | Canola | cytosol | 56.83 | 52.26 |
| Os04t0605300-01 | Rice | nucleus | 50.0 | 51.99 |
| Zm00001d002402_P001 | Maize | cytosol, nucleus, plastid | 51.09 | 51.52 |
| KXG27059 | Sorghum | cytosol, nucleus, plastid | 50.55 | 50.96 |
| TraesCS2A01G432800.1 | Wheat | cytosol, nucleus, plastid | 49.45 | 49.59 |
| TraesCS2D01G430800.1 | Wheat | cytosol, nucleus, plastid | 48.91 | 49.45 |
| TraesCS2B01G454100.1 | Wheat | cytosol, nucleus, plastid | 48.63 | 49.17 |
| HORVU2Hr1G101090.6 | Barley | plastid | 50.0 | 43.36 |
| CDX73881 | Canola | cytosol | 32.51 | 27.67 |
| CDY00732 | Canola | cytosol | 31.97 | 27.21 |
| CDX72539 | Canola | nucleus | 28.69 | 26.72 |
| CDY26604 | Canola | cytosol | 32.51 | 25.7 |
| CDY16042 | Canola | cytosol | 32.24 | 25.49 |
| CDX70122 | Canola | cytosol | 33.33 | 25.26 |
| CDX98871 | Canola | cytosol | 33.33 | 25.26 |
| CDY01012 | Canola | plastid | 32.79 | 25.1 |
| CDY08535 | Canola | plastid | 33.06 | 24.35 |
| CDY48988 | Canola | cytosol | 31.42 | 24.31 |
| CDY69629 | Canola | cytosol | 21.58 | 23.24 |
| CDY40770 | Canola | cytosol | 15.3 | 21.21 |
| CDX78316 | Canola | cytosol, mitochondrion, nucleus | 15.03 | 20.99 |
| CDX81078 | Canola | mitochondrion | 15.03 | 20.99 |
| CDY14024 | Canola | mitochondrion | 15.03 | 20.91 |
| CDX75505 | Canola | cytosol | 30.05 | 20.37 |
| CDX69142 | Canola | cytosol | 29.51 | 19.85 |
| CDY66405 | Canola | cytosol | 27.05 | 19.8 |
| CDY40632 | Canola | nucleus | 29.23 | 19.63 |
| CDY07843 | Canola | nucleus | 26.78 | 19.6 |
| CDY30364 | Canola | cytosol | 26.5 | 18.98 |
| CDY26809 | Canola | nucleus | 25.68 | 17.6 |
| CDY29703 | Canola | cytosol | 16.67 | 16.8 |
| CDX97851 | Canola | cytosol | 16.39 | 16.53 |
| CDX97667 | Canola | nucleus | 23.22 | 14.53 |
| CDY56828 | Canola | nucleus | 22.68 | 14.19 |
Protein Annotations
| EnsemblPlants:CDY46713 | EnsemblPlantsGene:GSBRNA2T00086023001 | Gene3D:3.80.10.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR001611 | InterPro:IPR032675 | InterPro:LRR_dom_sf | InterPro:Leu-rich_rpt | InterPro:Leu-rich_rpt_typical-subtyp | PANTHER:PTHR44997 |
| PFAM:PF13855 | PFscan:PS51450 | ProteinID:CDY46713 | ProteinID:CDY46713.1 | SEG:seg | SMART:SM00364 |
| SMART:SM00369 | SUPFAM:SSF52058 | UniParc:UPI0004EE9B48 | UniProt:A0A078IBV4 | MapMan:35.1 | : |
Description
BnaC07g42180DBnaC07g42180D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IBV4]
Coordinates
chrLK032682:-:87714..88970
Molecular Weight (calculated)
41562.9 Da
IEP (calculated)
8.378
GRAVY (calculated)
-0.151
Length
366 amino acids
Sequence
(BLAST)
(BLAST)
001: MICEEAYQYQ QLHAQNDHMM TMMMMDLSQS PLSSPILSNN TDNNEEERLE DVNLSCMALQ SLPNHSLNLG IICKLDLSNN HIKKIPESLT ARLLNLISLD
101: IHSNQIKALP NSIGCLSKLK ILNVSGNFLV YLPKTIQNCR SLEELNANFN ELIRLPDSIG LELTNLRKLC VNSNKLITLP TSITYLTSLR VLDARLNCLM
201: ILPEDLENLI NLEILNVSQN FQYLTALPSS IGLLMNLLEL DISYNKITVL PESIGCMRRL RKLSAEGNPI VSPPIEVVEQ SLQAVREYLS QKMNGRLVNA
301: SPKKKSWGFR KLVKYGTFNG RSRAWTREER EGLIMPEYRP IDILASNRFP GITPRSIFSP RTYFSR
101: IHSNQIKALP NSIGCLSKLK ILNVSGNFLV YLPKTIQNCR SLEELNANFN ELIRLPDSIG LELTNLRKLC VNSNKLITLP TSITYLTSLR VLDARLNCLM
201: ILPEDLENLI NLEILNVSQN FQYLTALPSS IGLLMNLLEL DISYNKITVL PESIGCMRRL RKLSAEGNPI VSPPIEVVEQ SLQAVREYLS QKMNGRLVNA
301: SPKKKSWGFR KLVKYGTFNG RSRAWTREER EGLIMPEYRP IDILASNRFP GITPRSIFSP RTYFSR
001: MICEDAYQYQ QLHGQKDHMM TMMMMDLSTS PPSSPLSPSL SPKSPSYNNN EEERLEVVNL SGMALQSLPN PSLNLANICK LDLSNNHIKK IPESLTARLL
101: NLIALDIHSN QIKALPNSIG CLSKLKILNV SGNFLVSLPQ TIQNCRSLEE LNANFNELIR LPDNIGLELT NLKKLCVNSN KLISLPATIT CLTSLRVLDA
201: RLNCLMILPE DLENLINLEI LNVSQNFQYL SALPSSIGLL LNLLELDISY NKITVLPESI GCMRRLRKLS AEGNPLVSPP IEVVEQSLHA VREYLSQKMN
301: GKLVNTAAKK KTWGFRKLVK YGTFNGRSRV WTREEREGLI MPEYRPIDIL TSTKFPVTCS PRRLFSPRTY FSR
101: NLIALDIHSN QIKALPNSIG CLSKLKILNV SGNFLVSLPQ TIQNCRSLEE LNANFNELIR LPDNIGLELT NLKKLCVNSN KLISLPATIT CLTSLRVLDA
201: RLNCLMILPE DLENLINLEI LNVSQNFQYL SALPSSIGLL LNLLELDISY NKITVLPESI GCMRRLRKLS AEGNPLVSPP IEVVEQSLHA VREYLSQKMN
301: GKLVNTAAKK KTWGFRKLVK YGTFNGRSRV WTREEREGLI MPEYRPIDIL TSTKFPVTCS PRRLFSPRTY FSR
Arabidopsis Description
PIRL7PIRL7 [Source:UniProtKB/TrEMBL;Acc:A0A178UXC0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.