Factsheet for Solyc12g017480.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
extracellular 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400016538	Potato	mitochondrion	95.88	96.14
VIT_11s0052g00390.t01	Wine grape	cytosol	59.62	70.45
KRH02753	Soybean	cytosol	64.84	65.56
GSMUA_Achr1P23570_001	Banana	nucleus	57.14	60.64
GSMUA_AchrUn_...	Banana	nucleus	56.32	60.29
CDY30187	Canola	nucleus	45.33	59.14
KRH37361	Soybean	cytosol	56.87	58.31
KRH12356	Soybean	cytosol	57.97	58.13
AT2G19330.1	Thale cress	nucleus, plastid	59.89	57.37
Os04t0605300-01	Rice	nucleus	54.95	56.82
Bra024119.1-P	Field mustard	cytosol	56.87	56.56
CDX82667	Canola	nucleus, plastid	59.34	56.25
Bra038857.1-P	Field mustard	nucleus, plastid	59.34	56.25
CDY39144	Canola	nucleus, plastid	59.34	56.25
Zm00001d002399_P001	Maize	nucleus	38.74	56.18
CDY46713	Canola	nucleus	55.77	55.46
AT4G29880.1	Thale cress	nucleus	56.59	55.23
AT4G26050.1	Thale cress	cytosol	57.97	55.09
Zm00001d002402_P001	Maize	cytosol, nucleus, plastid	54.4	54.55
KXG27059	Sorghum	cytosol, nucleus, plastid	54.4	54.55
CDY42760	Canola	cytosol, plastid	58.52	53.92
Bra019126.1-P	Field mustard	cytosol, plastid	58.52	53.92
CDX89369	Canola	cytosol, plastid	58.79	53.77
Bra013944.1-P	Field mustard	cytosol, plastid	58.79	53.77
CDX94383	Canola	cytosol	58.24	53.27
CDX92748	Canola	cytosol, plasma membrane, plastid	54.12	52.67
TraesCS2A01G432800.1	Wheat	cytosol, nucleus, plastid	52.2	52.05
TraesCS2D01G430800.1	Wheat	cytosol, nucleus, plastid	51.65	51.93
TraesCS2B01G454100.1	Wheat	cytosol, nucleus, plastid	51.37	51.66
HORVU2Hr1G101090.6	Barley	plastid	52.2	45.02
Solyc03g112270.2.1	Tomato	cytosol, nucleus, plastid	33.24	23.0
Solyc12g040320.1.1	Tomato	mitochondrion	15.11	21.07
Solyc03g115410.2.1	Tomato	cytosol	14.56	20.46
Solyc02g082350.2.1	Tomato	nucleus	29.95	18.89
Solyc08g006970.2.1	Tomato	cytosol	24.73	17.72
Solyc06g007250.2.1	Tomato	cytosol	15.66	15.2
Solyc10g006930.2.1	Tomato	cytosol	21.15	13.18

Protein Annotations

EnsemblPlants:Solyc12g017480.1.1	EnsemblPlantsGene:Solyc12g017480.1	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001611	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_typical-subtyp	PANTHER:PTHR44997
PFAM:PF13855	PFscan:PS51450	SEG:seg	SMART:SM00364	SMART:SM00369	SUPFAM:SSF52058
UniParc:UPI0002769412	UniProt:K4DD81	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chr12:+:6759518..6763974

Molecular Weight (calculated)

41178.1 Da

IEP (calculated)

9.386

GRAVY (calculated)

-0.328

Length

364 amino acids

Sequence
(BLAST)

001: MKMRMELVER RGRQQQRQEE KGAFERKSSR EKSTRRRMTI SIVEEEEEEE SPKIVDLSGM SLDFIPVNPT INLGAISKLH ISNNNLQSIP ESLTARLLNL
101: VELDMHSNQL NSIPNSIGCL SKLKLLNISG NLLLSLPKTI ENCRALEELN ANFNMLTHLP DTIGFELINL KKLCINSNKI AHLPYSTSHL TNLRVLDARL
201: NCLRSLPDDL ENLINLEILN VSQNFQYLSK LPYSVGFLIS LHELDVSYNK ITELPDSIGC LKKLQKLSVE GNRLVSPPPE VVEQGIRAVK QYLCEKINGM
301: HDKSPKKKSW FGKLARCSTF SGANLPRDDF GVPSNRTIDA IASPRFIAML SPRRLLSPKT YFSK

Best Arabidopsis Sequence Match ( AT2G19330.1 )
(BLAST)

001: MICEEAYHQQ PQIQKEQMMT MDQRNNHQRK RSPLSSPSSP SSPSSPSSPK SPSFNNNEEE RLEVVNLSGM ALESLPNPSL NLAQICKLDL SNNHLQTIPE
101: SLTARLLNLI ALDVHSNQIK ALPNSIGCLS KLKTLNVSGN FLVSFPKSIQ HCRSLEELNA NFNKLIRLPD SIGFELTNLR KLSINSNKLI SLPISITHLT
201: SLRVLDARLN CLMILPDDLE NLINLEILNV SQNFQYLSAL PSSIGLLMNL IELDVSYNKI TVLPESIGCM RRLRKLSVEG NPLVSPPIEV MEQNLQVVRE
301: YLTQKMNGGS PRSPSKKKSW GFGKLVKYGT FNGGSRSWNR EEREGFIMPE YRSIDSLASP RYSGMFSPRR LFSPRTYFSR

Arabidopsis Description

PIRL6Plant intracellular Ras-group-related LRR protein 6 [Source:UniProtKB/Swiss-Prot;Acc:O64566]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.