Factsheet for Solyc12g040320.1.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 4
cytosol 1
extracellular 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400013776	Potato	cytosol	75.86	87.22
Solyc03g115410.2.1	Tomato	cytosol	82.38	83.01
VIT_17s0000g06940.t01	Wine grape	cytosol	76.25	76.25
KRH54661	Soybean	cytosol	75.86	75.86
KRH63260	Soybean	cytosol	75.86	75.86
Bra028680.1-P	Field mustard	cytosol	70.11	69.32
CDY40770	Canola	cytosol	70.11	69.32
CDY14024	Canola	mitochondrion	69.35	68.82
AT5G07910.1	Thale cress	cytosol	68.58	68.32
Bra005960.1-P	Field mustard	cytosol, mitochondrion, nucleus	68.2	67.94
CDX78316	Canola	cytosol, mitochondrion, nucleus	68.2	67.94
CDX81078	Canola	mitochondrion	68.2	67.94
GSMUA_Achr4P03290_001	Banana	cytosol	34.87	66.42
EER95291	Sorghum	cytosol	61.3	61.07
TraesCS4B01G249200.1	Wheat	cytosol, nucleus, plastid	60.92	60.69
HORVU4Hr1G068710.2	Barley	cytosol, mitochondrion, nucleus, plastid	59.77	59.54
TraesCS4D01G249500.1	Wheat	cytosol, mitochondrion	59.77	59.54
GSMUA_Achr4P03280_001	Banana	plastid	31.03	56.64
Os03t0212200-01	Rice	plasma membrane	30.27	55.63
Zm00001d028191_P002	Maize	cytosol	60.92	47.89
TraesCS4A01G055400.1	Wheat	nucleus	60.54	46.61
Solyc12g017480.1.1	Tomato	cytosol	21.07	15.11
Solyc02g082350.2.1	Tomato	nucleus	29.89	13.52
Solyc06g007250.2.1	Tomato	cytosol	19.16	13.33
Solyc08g006970.2.1	Tomato	cytosol	25.67	13.19
Solyc03g112270.2.1	Tomato	cytosol, nucleus, plastid	26.44	13.12
Solyc10g006930.2.1	Tomato	cytosol	26.44	11.82

Protein Annotations

EnsemblPlants:Solyc12g040320.1.1	EnsemblPlantsGene:Solyc12g040320.1	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001611	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_typical-subtyp	PANTHER:PTHR45289
PANTHER:PTHR45289:SF2	PFscan:PS51450	SEG:seg	SMART:SM00364	SMART:SM00369	SUPFAM:SSF52058
UniParc:UPI000276A67C	UniProt:K4DES7	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chr12:+:44548469..44559168

Molecular Weight (calculated)

29130.6 Da

IEP (calculated)

7.778

GRAVY (calculated)

-0.130

Length

261 amino acids

Sequence
(BLAST)

001: MGCCSSKAAD TKATRMARWR STGIVALRDS KLKSFPDEVI SLEKSVRTLD LTHNKLVQIP MEINKLINLQ RLILADNLID NLPVNLGLLK SLKVATLDGN
101: RIRALPDELG QLVKLERLSV SGNLLMSLPE TIGSLQNLVL LDISNNKLKF FPESIGSCFS LEELQANDNS IEELPVSVCN LVQLKSLCLN NNNLNQMPLN
201: LLRECKSLQT VSLHGNPISM DQFQQMDGFK DFEIRRKQKF DKQINSNVII SSKGLDEGVD L

Best Arabidopsis Sequence Match ( AT5G07910.1 )
(BLAST)

001: MGCCASNTAG GSKANRISRW RSTGIVGLRD SKLKTFPDEV IEMERAVRTL DLTHNKIADV PGEISKLINM QRLLIADNLV ERLPGNLGKL QSLKVLMLDG
101: NRISCLPDEL GQLVRLEQLS ISRNMLIYLP DTIGSLRNLL LLNVSNNRLK SLPESVGSCA SLEEVQANDN VVEELPASLC NLIQLKSLSL DNNQVNQIPD
201: GLLIHCKSLQ NLSLHNNPIS MDQFQLMEGY QDFEERRKKK FDKQIDSNVM MGSKALDVGV DK

Arabidopsis Description

Leucine-rich repeat (LRR) family protein [Source:UniProtKB/TrEMBL;Acc:Q8RWI2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.