Factsheet for Solyc02g082350.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
cytosol 2
extracellular 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, extracellular, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	extracellular
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc09g089940.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G35470.1	Solyc09g089940.1.1	AT5G43400.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400035497	Potato	cytosol	94.45	95.28
VIT_07s0031g02310.t01	Wine grape	cytosol	64.12	66.43
CDX72539	Canola	nucleus	45.23	66.41
KRH76512	Soybean	nucleus	66.03	66.38
KRH39397	Soybean	nucleus	62.74	65.7
KRH07815	Soybean	cytosol	62.05	65.33
KRH28950	Soybean	cytosol	63.95	65.08
Bra024514.1-P	Field mustard	cytosol	54.42	62.8
CDY07843	Canola	nucleus	54.42	62.8
GSMUA_Achr5P23850_001	Banana	cytosol	59.97	62.79
CDY66405	Canola	cytosol	54.25	62.6
GSMUA_Achr8P25490_001	Banana	nucleus	59.79	62.39
CDX75505	Canola	cytosol	57.54	61.48
AT2G17440.1	Thale cress	cytosol	55.98	61.41
CDY30364	Canola	cytosol	54.25	61.25
AT4G35470.1	Thale cress	nucleus	58.23	61.2
Bra037271.1-P	Field mustard	cytosol	54.25	60.78
CDX69142	Canola	cytosol	57.19	60.66
CDY26809	Canola	nucleus	55.98	60.49
Bra011617.1-P	Field mustard	cytosol	47.31	59.74
CDY40632	Canola	nucleus	56.15	59.45
Bra017712.1-P	Field mustard	nucleus	56.15	59.45
TraesCS7B01G143600.3	Wheat	nucleus	51.47	52.38
Os08t0511700-00	Rice	plasma membrane	51.82	52.09
Zm00001d031470_P001	Maize	plasma membrane	51.82	51.82
EES14257	Sorghum	nucleus	51.82	51.73
TraesCS7A01G247900.2	Wheat	cytosol	50.43	51.05
TraesCS7D01G246700.1	Wheat	nucleus	50.26	50.88
Solyc08g006970.2.1	Tomato	cytosol	41.77	47.44
Solyc03g115410.2.1	Tomato	cytosol	13.69	30.5
Solyc12g017480.1.1	Tomato	cytosol	18.89	29.95
Solyc12g040320.1.1	Tomato	mitochondrion	13.52	29.89
Solyc03g112270.2.1	Tomato	cytosol, nucleus, plastid	23.05	25.29
GSMUA_Achr6P03430_001	Banana	nucleus	20.62	25.21
Solyc06g007250.2.1	Tomato	cytosol	13.69	21.07
Solyc10g006930.2.1	Tomato	cytosol	16.81	16.61

Protein Annotations

Gene3D:3.80.10.10	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005623	GO:GO:0005886	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009416
GO:GO:0009628	GO:GO:0009987	GO:GO:0016020	InterPro:IPR001611	InterPro:IPR032675	UniProt:K4BAA5
InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_typical-subtyp	PFAM:PF13855	PRINTS:PR00019	PFscan:PS51450
PANTHER:PTHR44513	PANTHER:PTHR44513:SF1	SMART:SM00364	SMART:SM00369	SUPFAM:SSF52058	EnsemblPlantsGene:Solyc02g082350.2
EnsemblPlants:Solyc02g082350.2.1	UniParc:UPI0002767F16	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr2:+:46047106..46049800

Molecular Weight (calculated)

63603.5 Da

IEP (calculated)

6.345

GRAVY (calculated)

-0.252

Length

577 amino acids

Sequence
(BLAST)

001: MGSLGMSIDE IVQEIMRIHG SLPTRPSIDE VEAARALIGN LEKEDQLKIE AIMRQNKRKG VPEELFKILQ EMQRNALLFQ SKEQKREALK LLDLENIHSV
101: FDDLIQRATK CLPSKSHDND PSSSSSSIEP NDLSLANQVS FSGNSNRRLE SPATTTAAAS SSSFYNSKDS IKASELYSRD DSYLNKAKAT FLVDGIGVGL
201: RSGDASSGPK IVDSTLKPSA ISGQDGEKLS LIKLASMIEV SSKKGSRELM LRNKLSDQVE WLPDSIGKLS SLITLDLSEN RITVLPTTIG GLLSLQKLDL
301: HSNKIVELPD CIGDLLNLVY LDLSGNNLKL LPASFARLAH LQELDLSSNM LSVLPETIGS LVSLKKLIVE TNDLEELPHT IGQCTSLKEL RVDYNHLKAL
401: PEAVGRLESL EILTARYNNI RLLPTTMSSL TSLKELNVSF NEIESVPESL CFATSLVKLN ISNNFADLRS LPRSIGNLEL LEELDMSNNQ IRVLPDSFRM
501: LSSLRVLKTD GNPLEVPPGS VLEKGAQVVV QYMSDLVANR DVKTQPAKKK KKSWTHICCF SSSNKRQRNG SMDYVNA

Best Arabidopsis Sequence Match ( AT4G35470.1 )
(BLAST)

001: MDLMQMDKRL DSTEQVVEEI MRIHRSLPAR PGIDEVEAAK GLIDNVEKED QACLEAIARQ RKSSEVPGEL FMVLQEMKKG YVQFRSKEQI REALKLLDLE
101: SVHSLFDDFI QRASNCIASP SSNGSVSSRP PLPPATTTAA RSDSQSSLNF SERAPVRPKD MVSRDDSFVT KSKPSSLYSD GFAAPPRRPQ ILDSTLTTGN
201: DGEKLSLIKL ASLIEVSAKK ATQEINLQNK LTEQLEWLPD SLGKLSSLTS LDLSENHIVV LPNTIGGLSS LTKLDLHSNR IGQLPESIGE LLNLVYLNLG
301: SNQLSSLPSA FSRLVRLEEL DLSCNNLPIL PESIGSLVSL KKLDVETNDI EEIPYSIGGC SSLIELRADY NKLKALPEAI GKITTLEILS VRYNNIRQLP
401: TTMSSLASLK ELDVSFNELE SVPESLCFAT TLVKLNIGNN FADMVSLPRS IGNLEMLEEL DISNNQIRVL PDSFKMLTKL RVFRAQENPL HIPPRDIAEK
501: GPQAVVQYMN DLVETRNAKS LMVKPKKSWV QMCFFSKSNK RKQSSMEIV

Arabidopsis Description

PIRL4Plant intracellular Ras-group-related LRR protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVW8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.