Factsheet for GSMUA_Achr6P03430_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
endoplasmic reticulum 1
plasma membrane 1
extracellular 1
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G35470.1	GSMUA_AchrUn_...	AT5G43400.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX72539	Canola	nucleus	24.79	29.77
GSMUA_Achr8P25490_001	Banana	nucleus	29.03	24.77
Bra011617.1-P	Field mustard	cytosol	23.94	24.73
GSMUA_AchrUn_...	Banana	nucleus	17.8	24.71
GSMUA_Achr5P23850_001	Banana	cytosol	28.39	24.32
GSMUA_Achr1P23570_001	Banana	nucleus	17.58	24.2
GSMUA_Achr4P21530_001	Banana	cytosol	25.21	22.41
TraesCS7A01G247900.2	Wheat	cytosol	26.91	22.28
TraesCS7B01G143600.3	Wheat	nucleus	26.69	22.22
TraesCS7D01G246700.1	Wheat	nucleus	26.69	22.11
GSMUA_Achr4P19230_001	Banana	cytosol	24.36	22.07
GSMUA_Achr4P03290_001	Banana	cytosol	6.36	21.9
CDY66405	Canola	cytosol	23.09	21.8
Bra024514.1-P	Field mustard	cytosol	22.88	21.6
KRH39397	Soybean	nucleus	25.21	21.6
VIT_07s0031g02310.t01	Wine grape	cytosol	25.42	21.54
Zm00001d031470_P001	Maize	plasma membrane	26.27	21.49
CDY07843	Canola	nucleus	22.67	21.4
KRH07815	Soybean	cytosol	24.79	21.35
Bra017712.1-P	Field mustard	nucleus	24.58	21.28
CDY40632	Canola	nucleus	24.58	21.28
EES14257	Sorghum	nucleus	26.06	21.28
Os08t0511700-00	Rice	plasma membrane	25.85	21.25
PGSC0003DMT400035497	Potato	cytosol	25.64	21.15
CDX69142	Canola	cytosol	24.36	21.14
AT4G35470.1	Thale cress	nucleus	24.58	21.13
CDX75505	Canola	cytosol	24.15	21.11
PGSC0003DMT400059678	Potato	nucleus	25.42	21.09
KRH76512	Soybean	nucleus	25.64	21.08
KRH28950	Soybean	cytosol	25.21	20.99
CDY30364	Canola	cytosol	22.46	20.74
Solyc02g082350.2.1	Tomato	nucleus	25.21	20.62
Bra037271.1-P	Field mustard	cytosol	22.46	20.58
AT2G17440.1	Thale cress	cytosol	22.67	20.34
CDY26809	Canola	nucleus	22.67	20.04
GSMUA_Achr1P13500_001	Banana	plastid	16.1	15.54
GSMUA_Achr8P28520_001	Banana	cytosol, nucleus, plastid	16.1	15.17
GSMUA_Achr5P07410_001	Banana	cytosol	11.86	14.74
GSMUA_Achr4P04360_001	Banana	cytosol	15.04	12.14
GSMUA_Achr4P03280_001	Banana	plastid	1.06	3.5

Protein Annotations

EnsemblPlants:GSMUA_Achr6P03430_001	EnsemblPlants:GSMUA_Achr6T03430_001	EnsemblPlantsGene:GSMUA_Achr6G03430_001	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR001611	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_typical-subtyp
PANTHER:PTHR44513	PANTHER:PTHR44513:SF1	PFscan:PS51450	SEG:seg	SMART:SM00364	SMART:SM00369
SUPFAM:SSF52075	UniParc:UPI000296ECD2	UniProt:M0T3U1	MapMan:35.1	:	:

Description

Putative leucine rich repeat containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr6G03430_001]

Coordinates

chr6:+:2361947..2366179

Molecular Weight (calculated)

53142.6 Da

IEP (calculated)

8.335

GRAVY (calculated)

-0.519

Length

472 amino acids

Sequence
(BLAST)

001: MADSNTPTSY SSSASSVFYS ENGVKRNTDW VSRDNSFLKM PRSHVDGIVG TPTLILISLT SFFRIFVRDE YWFDYNYVCD GEESGKLIEV SAKKGTRDLT
101: RQNKLMDQVD WLPDSIGKLS DLTRIFGGSH CSLQAYNNIK GLPITMASLS KMKELDVSFN ELESIPENLC LATSLIKLNV GNNFADLQSL PCSIGNLELL
201: ELDISNNQIR VLPDSFEMLS HLRVLHTEEN PLEVPPRHIA EMGAQAIVQY MVEPVAKRDV KVQPLKSKMN FRKCIIQCGI MIMMHICKEN LFQAHVTNVS
301: RMRFQSVKRE CSYQVSLKNL IPQDLNDHLS CLYCWFGLMG RGRGKGKKLT MVTGNEDPGS GGEEVLPTYK RRGRPQKPLK DESDDETEKI EDEDNVKLTA
401: QSKEIKGSTM VNGKKRTRYS NAKQNSDLVI DKISAGSQSI DEDSTRSNGF RHNGSRRKSK PRRAAEAGVE CK

Best Arabidopsis Sequence Match ( AT4G35470.1 )
(BLAST)

001: MDLMQMDKRL DSTEQVVEEI MRIHRSLPAR PGIDEVEAAK GLIDNVEKED QACLEAIARQ RKSSEVPGEL FMVLQEMKKG YVQFRSKEQI REALKLLDLE
101: SVHSLFDDFI QRASNCIASP SSNGSVSSRP PLPPATTTAA RSDSQSSLNF SERAPVRPKD MVSRDDSFVT KSKPSSLYSD GFAAPPRRPQ ILDSTLTTGN
201: DGEKLSLIKL ASLIEVSAKK ATQEINLQNK LTEQLEWLPD SLGKLSSLTS LDLSENHIVV LPNTIGGLSS LTKLDLHSNR IGQLPESIGE LLNLVYLNLG
301: SNQLSSLPSA FSRLVRLEEL DLSCNNLPIL PESIGSLVSL KKLDVETNDI EEIPYSIGGC SSLIELRADY NKLKALPEAI GKITTLEILS VRYNNIRQLP
401: TTMSSLASLK ELDVSFNELE SVPESLCFAT TLVKLNIGNN FADMVSLPRS IGNLEMLEEL DISNNQIRVL PDSFKMLTKL RVFRAQENPL HIPPRDIAEK
501: GPQAVVQYMN DLVETRNAKS LMVKPKKSWV QMCFFSKSNK RKQSSMEIV

Arabidopsis Description

PIRL4Plant intracellular Ras-group-related LRR protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVW8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.