Factsheet for GSMUA_Achr4P03290_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
extracellular 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU4Hr1G068710.2	Barley	cytosol, mitochondrion, nucleus, plastid	76.64	40.08
TraesCS4D01G249500.1	Wheat	cytosol, mitochondrion	75.91	39.69
TraesCS4B01G249200.1	Wheat	cytosol, nucleus, plastid	75.18	39.31
PGSC0003DMT400013776	Potato	cytosol	64.96	39.21
EER95291	Sorghum	cytosol	72.26	37.79
KRH54661	Soybean	cytosol	71.53	37.55
VIT_17s0000g06940.t01	Wine grape	cytosol	70.8	37.16
KRH63260	Soybean	cytosol	70.8	37.16
Solyc03g115410.2.1	Tomato	cytosol	69.34	36.68
PGSC0003DMT400063105	Potato	cytosol	67.88	35.5
Solyc12g040320.1.1	Tomato	mitochondrion	66.42	34.87
AT5G07910.1	Thale cress	cytosol	64.96	33.97
CDY14024	Canola	mitochondrion	64.96	33.84
Bra028680.1-P	Field mustard	cytosol	64.96	33.71
CDY40770	Canola	cytosol	64.96	33.71
CDX81078	Canola	mitochondrion	63.5	33.21
Bra005960.1-P	Field mustard	cytosol, mitochondrion, nucleus	62.77	32.82
CDX78316	Canola	cytosol, mitochondrion, nucleus	62.77	32.82
TraesCS4A01G055400.1	Wheat	nucleus	75.18	30.38
Zm00001d028191_P002	Maize	cytosol	71.53	29.52
GSMUA_Achr1P23570_001	Banana	nucleus	26.28	10.5
GSMUA_AchrUn_...	Banana	nucleus	25.55	10.29
GSMUA_Achr1P13500_001	Banana	plastid	34.31	9.61
GSMUA_Achr8P28520_001	Banana	cytosol, nucleus, plastid	35.04	9.58
GSMUA_Achr5P23850_001	Banana	cytosol	29.93	7.44
GSMUA_Achr8P25490_001	Banana	nucleus	29.2	7.23
GSMUA_Achr5P07410_001	Banana	cytosol	19.71	7.11
GSMUA_Achr4P04360_001	Banana	cytosol	28.47	6.67
GSMUA_Achr4P21530_001	Banana	cytosol	25.55	6.59
GSMUA_Achr6P03430_001	Banana	nucleus	21.9	6.36
GSMUA_Achr4P19230_001	Banana	cytosol	24.09	6.33
Os03t0212200-01	Rice	plasma membrane	5.84	5.63
GSMUA_Achr4P03280_001	Banana	plastid	5.11	4.9

Protein Annotations

EnsemblPlants:GSMUA_Achr4P03290_001	EnsemblPlants:GSMUA_Achr4T03290_001	EnsemblPlantsGene:GSMUA_Achr4G03290_001	Gene3D:3.80.10.10	InterPro:IPR032675	InterPro:LRR_dom_sf
InterPro:Leu-rich_rpt_typical-subtyp	PANTHER:PTHR45289	PANTHER:PTHR45289:SF2	SMART:SM00364	SMART:SM00369	SUPFAM:SSF52058
UniParc:UPI000295D685	UniProt:M0SKP6	MapMan:35.1	:	:	:

Description

Putative LRR repeats and ubiquitin-like domain-containing protein At2g30105 [Source:GMGC_GENE;Acc:GSMUA_Achr4G03290_001]

Coordinates

chr4:+:2644260..2648212

Molecular Weight (calculated)

15660.1 Da

IEP (calculated)

8.503

GRAVY (calculated)

-0.501

Length

137 amino acids

Sequence
(BLAST)

001: MRRKHTIVHK TKLLLLNVSD NKLKSLPESI GGCVALEELQ ANGNFIEELP PSVCNLLHLK FLSLNNNTIR QLPQNLLKDC KALQNVSLHD NPISMDQFQQ
101: MKGFEEFEAR RKKKYDKQID SNVMMNSAGL DEGLDLR

Best Arabidopsis Sequence Match ( AT5G07910.1 )
(BLAST)

001: MGCCASNTAG GSKANRISRW RSTGIVGLRD SKLKTFPDEV IEMERAVRTL DLTHNKIADV PGEISKLINM QRLLIADNLV ERLPGNLGKL QSLKVLMLDG
101: NRISCLPDEL GQLVRLEQLS ISRNMLIYLP DTIGSLRNLL LLNVSNNRLK SLPESVGSCA SLEEVQANDN VVEELPASLC NLIQLKSLSL DNNQVNQIPD
201: GLLIHCKSLQ NLSLHNNPIS MDQFQLMEGY QDFEERRKKK FDKQIDSNVM MGSKALDVGV DK

Arabidopsis Description

Leucine-rich repeat (LRR) family protein [Source:UniProtKB/TrEMBL;Acc:Q8RWI2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.