Factsheet for GSMUA_Achr8P25490_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G35470.1	GSMUA_AchrUn_...	AT5G43400.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P23850_001	Banana	cytosol	81.74	82.03
VIT_07s0031g02310.t01	Wine grape	cytosol	66.55	66.07
KRH76512	Soybean	nucleus	68.17	65.68
KRH28950	Soybean	cytosol	67.27	65.61
KRH39397	Soybean	nucleus	64.74	64.97
KRH07815	Soybean	cytosol	63.47	64.05
CDX72539	Canola	nucleus	44.48	62.6
PGSC0003DMT400059678	Potato	nucleus	64.38	62.57
Bra024514.1-P	Field mustard	cytosol	55.88	61.8
CDY66405	Canola	cytosol	55.88	61.8
CDY07843	Canola	nucleus	55.7	61.6
AT4G35470.1	Thale cress	nucleus	60.4	60.84
Bra037271.1-P	Field mustard	cytosol	56.24	60.39
CDX75505	Canola	cytosol	58.59	60.0
PGSC0003DMT400035497	Potato	cytosol	62.03	59.97
AT2G17440.1	Thale cress	cytosol	56.96	59.89
Solyc02g082350.2.1	Tomato	nucleus	62.39	59.79
CDY30364	Canola	cytosol	55.15	59.69
TraesCS7B01G143600.3	Wheat	nucleus	61.12	59.61
CDY40632	Canola	nucleus	58.59	59.45
Bra017712.1-P	Field mustard	nucleus	58.59	59.45
CDX69142	Canola	cytosol	58.23	59.19
TraesCS7A01G247900.2	Wheat	cytosol	60.58	58.77
TraesCS7D01G246700.1	Wheat	nucleus	60.22	58.42
Zm00001d031470_P001	Maize	plasma membrane	60.94	58.41
EES14257	Sorghum	nucleus	60.94	58.3
CDY26809	Canola	nucleus	56.24	58.24
Bra011617.1-P	Field mustard	cytosol	47.74	57.77
Os08t0511700-00	Rice	plasma membrane	59.31	57.14
GSMUA_Achr4P19230_001	Banana	cytosol	50.81	53.93
GSMUA_Achr4P21530_001	Banana	cytosol	51.18	53.3
GSMUA_Achr1P23570_001	Banana	nucleus	20.43	32.94
GSMUA_Achr4P03280_001	Banana	plastid	8.5	32.87
GSMUA_AchrUn_...	Banana	nucleus	20.07	32.65
GSMUA_Achr4P03290_001	Banana	cytosol	7.23	29.2
GSMUA_Achr6P03430_001	Banana	nucleus	24.77	29.03
GSMUA_Achr8P28520_001	Banana	cytosol, nucleus, plastid	24.95	27.54
GSMUA_Achr1P13500_001	Banana	plastid	23.87	26.99
GSMUA_Achr5P07410_001	Banana	cytosol	12.84	18.68
GSMUA_Achr4P04360_001	Banana	cytosol	16.64	15.73

Protein Annotations

Gene3D:3.80.10.10	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSMUA_Achr8G25490_001
EnsemblPlants:GSMUA_Achr8P25490_001	EnsemblPlants:GSMUA_Achr8T25490_001	InterPro:IPR001611	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt
InterPro:Leu-rich_rpt_typical-subtyp	UniProt:M0TTK2	PFAM:PF13516	PFAM:PF13855	PRINTS:PR00019	PFscan:PS51450
PANTHER:PTHR44513	PANTHER:PTHR44513:SF1	SMART:SM00364	SMART:SM00369	SUPFAM:SSF52058	UniParc:UPI0002964A10
SEG:seg	:	:	:	:	:

Description

Putative Leucine-rich repeat-containing protein 40 [Source:GMGC_GENE;Acc:GSMUA_Achr8G25490_001]

Coordinates

chr8:+:29356835..29359351

Molecular Weight (calculated)

61267.7 Da

IEP (calculated)

6.172

GRAVY (calculated)

-0.258

Length

553 amino acids

Sequence
(BLAST)

001: MASSLHSVDS LVEEIMRLHR SLPPRPGIDE VEAAMALVRN VDKEEQTRID AIQNQNKGFE VPEELFFVLQ EMQKNVVCHQ SKEQKREALK LLDLENVHIL
101: FDKLIQRASS CLPSSSSGLA PSIPMNSEKV STANSKTPTG YSSSPTSVFH SEKEAGRSSD RVTRDDSFLK MPKSHIDGIG TKSHLSGGMI PNQTTRKEVI
201: SGEEGGKLSL IKLASLIEVS AKKGTRELNL QNKLMDQIDW LPDSIGKLSG LVTLDLSENR IVALPATIGS LFSLTRLDLH SNRISQVPDS IGDLCSLLFL
301: DLRGNNLTSL PSIFGKLVHL EELDLSSNQL SSLPDAIGNL IRLKKLNAET NDIEELPHTI GHCVALAELR ADYNRLKGLP EAVGRLESLE ILSVRYNNIK
401: GLPTTMASLS KLKELDVSFN ELESIPESLC LATTLIKLNV GNNFADLQSL PRSIGNLELL EELDISNNQI RVLPDSFGML SQLRVLHAEE NPLEVPPRHI
501: AEMGAQAVVQ YVAEYVTKKD VKVQPEKSKP CWVQYCFFCR PNKRKHDGFS YVN

Best Arabidopsis Sequence Match ( AT4G35470.1 )
(BLAST)

001: MDLMQMDKRL DSTEQVVEEI MRIHRSLPAR PGIDEVEAAK GLIDNVEKED QACLEAIARQ RKSSEVPGEL FMVLQEMKKG YVQFRSKEQI REALKLLDLE
101: SVHSLFDDFI QRASNCIASP SSNGSVSSRP PLPPATTTAA RSDSQSSLNF SERAPVRPKD MVSRDDSFVT KSKPSSLYSD GFAAPPRRPQ ILDSTLTTGN
201: DGEKLSLIKL ASLIEVSAKK ATQEINLQNK LTEQLEWLPD SLGKLSSLTS LDLSENHIVV LPNTIGGLSS LTKLDLHSNR IGQLPESIGE LLNLVYLNLG
301: SNQLSSLPSA FSRLVRLEEL DLSCNNLPIL PESIGSLVSL KKLDVETNDI EEIPYSIGGC SSLIELRADY NKLKALPEAI GKITTLEILS VRYNNIRQLP
401: TTMSSLASLK ELDVSFNELE SVPESLCFAT TLVKLNIGNN FADMVSLPRS IGNLEMLEEL DISNNQIRVL PDSFKMLTKL RVFRAQENPL HIPPRDIAEK
501: GPQAVVQYMN DLVETRNAKS LMVKPKKSWV QMCFFSKSNK RKQSSMEIV

Arabidopsis Description

PIRL4Plant intracellular Ras-group-related LRR protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVW8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.