Factsheet for GSMUA_Achr8P28520_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
plastid 2
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P13500_001	Banana	plastid	78.84	80.78
VIT_17s0000g09230.t01	Wine grape	cytosol	57.48	64.14
CDY00732	Canola	cytosol	51.7	60.23
CDX98871	Canola	cytosol	57.88	60.04
CDX70122	Canola	cytosol	57.88	60.04
CDX73881	Canola	cytosol	51.1	59.53
Bra009140.1-P	Field mustard	cytosol	58.28	57.94
AT5G05850.1	Thale cress	plastid	58.48	57.91
Solyc03g112270.2.1	Tomato	cytosol, nucleus, plastid	60.68	57.79
PGSC0003DMT400046655	Potato	cytosol	60.48	57.6
Zm00001d025681_P001	Maize	plasma membrane	57.68	57.57
TraesCS2D01G335800.1	Wheat	cytosol, plastid	57.68	57.57
TraesCS2A01G327100.1	Wheat	cytosol, plastid	57.29	57.06
TraesCS2B01G354900.1	Wheat	plastid	57.09	56.97
KRH63625	Soybean	nucleus	58.28	56.92
CDY01012	Canola	plastid	54.09	56.69
EES10994	Sorghum	plastid	57.68	56.56
Bra034849.1-P	Field mustard	plastid	55.89	56.34
AT3G11330.1	Thale cress	plastid	56.09	56.31
Os02t0593600-01	Rice	plasma membrane	55.69	55.69
CDY08535	Canola	plastid	55.09	55.53
Bra001399.1-P	Field mustard	plastid	55.09	55.42
KRH74520	Soybean	cytosol	50.9	55.31
KRH57134	Soybean	plastid	55.89	54.79
TraesCS6D01G191800.1	Wheat	plastid	53.89	54.77
EES05350	Sorghum	plastid	54.09	53.88
HORVU7Hr1G066320.3	Barley	cytosol	29.94	53.57
HORVU6Hr1G053210.1	Barley	cytosol, plastid	53.89	52.33
HORVU2Hr1G082540.6	Barley	cytosol, mitochondrion	42.52	51.95
Zm00001d017071_P002	Maize	plastid	53.69	50.85
Bra026944.1-P	Field mustard	cytosol	44.91	48.6
CDY26604	Canola	cytosol	44.91	48.6
AT1G12970.1	Thale cress	cytosol	44.91	48.49
Bra032935.1-P	Field mustard	plastid	43.11	48.43
CDY16042	Canola	cytosol	44.71	48.38
CDY48988	Canola	cytosol	44.31	46.93
CDY69629	Canola	cytosol	31.74	46.76
AT3G26500.1	Thale cress	cytosol	43.71	46.5
GSMUA_Achr1P23570_001	Banana	nucleus	24.75	36.15
GSMUA_Achr4P03290_001	Banana	cytosol	9.58	35.04
GSMUA_AchrUn_...	Banana	nucleus	23.75	35.0
GSMUA_Achr4P19230_001	Banana	cytosol	27.15	26.1
GSMUA_Achr4P21530_001	Banana	cytosol	26.95	25.42
GSMUA_Achr5P23850_001	Banana	cytosol	27.94	25.41
GSMUA_Achr8P25490_001	Banana	nucleus	27.54	24.95
GSMUA_Achr4P03280_001	Banana	plastid	6.99	24.48
GSMUA_Achr5P07410_001	Banana	cytosol	17.37	22.89
GSMUA_Achr4P04360_001	Banana	cytosol	21.56	18.46
GSMUA_Achr6P03430_001	Banana	nucleus	15.17	16.1

Protein Annotations

Gene3D:3.80.10.10	MapMan:35.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
EnsemblPlantsGene:GSMUA_Achr8G28520_001	EnsemblPlants:GSMUA_Achr8P28520_001	EnsemblPlants:GSMUA_Achr8T28520_001	InterPro:IPR001611	InterPro:IPR032675	InterPro:LRR_dom_sf
InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_typical-subtyp	UniProt:M0TUF5	PFAM:PF13855	PRINTS:PR00019	PFscan:PS51450
PANTHER:PTHR44373	PANTHER:PTHR44373:SF2	SMART:SM00364	SMART:SM00369	SUPFAM:SSF52058	UniParc:UPI00029684DF
SEG:seg	:	:	:	:	:

Description

Putative Malignant fibrous histiocytoma-amplified sequence 1 [Source:GMGC_GENE;Acc:GSMUA_Achr8G28520_001]

Coordinates

chr8:-:31299765..31304496

Molecular Weight (calculated)

55334.2 Da

IEP (calculated)

4.726

GRAVY (calculated)

-0.251

Length

501 amino acids

Sequence
(BLAST)

001: MDPNPKSFPI LSYVMSRIAS FKAPQAVDHH DVEQPPPLDR PIRRHDGVGG GDIDLVVERL PRLQHPALLA SMASAVTEVA QTRSVLRLLG DRPDHEAVDA
101: ARARVAEIDA DLSRGLEEIR EKAALRAVIQ LDEMHEAYEK LLREAENRLV KMYGSAAEGG DVGDGKQGAE MGQEEGEEVN EEVIDILQGG PGKSLERVDL
201: SGRHLRYLPE AFGKLRGLLY LNLSNNQLQA VPDAIAGLEY LEELHLSSSS LVSLPDSIGL LLNLKILDVS ANKLKSLPDS ISKCRSLVEL NASYNELTYL
301: PTNIGHELQS LEKLWIHLNK LRSLPTSVCE MRALRLLDAH FNELRGLPYA IGNLSNLEVL NLSSNFSDLQ ELPASFGDLI NLRELDLSNN QIHALPDTFG
401: RLDKLTKLNL DQNPLVVPPL EVIMQGVEAV KDYMAKRLLD ILLEDEKSMA EEMSPTQAGN GWLMRSTSWL NSWVSGVSGS VAGYLGSGQK SFRDPYLDQQ
501: L

Best Arabidopsis Sequence Match ( AT5G05850.1 )
(BLAST)

001: MATELNPKNF PVLSYVLDRL PSFTAKSSSS SDVEPPPSKS DPSSSSNHSI EIVTQMPHLA HPDVLASMTN ATADVSQTRS VLRTLGPRPD HETVDRARAR
101: LREIDASLSE SFEEIALSPN DIDVAEKEQK RREAVEQEKI WYKSILKLNE LHESYEKLLK EAEERLVRIY ESAEKNAAAV AEEEAAEVEV NEEVVSILQQ
201: AAENPLDRVD LSGRKLKLLP EAFGKIQGLL VLNLYNNQLQ AIPDSIAGLH NLLELDVSTN FLETLPDSIG LLSKLKILNV SCNKLTTLPD SICHCGSLVV
301: LDASYNNLTY LPTNIGFELV KLEKLLIHLN KIRSLPTSIG EMRSLRYLDA HFNELNGLPN SFGLLTNLEY LNLSSNFSDL QDLPASFGDL ISLQELDLSN
401: NQIHSLPDAF GTLVNLTKLN LDQNPLVVPP DEVVKQGVDA VKMYMGKRWV SMLEEEEKMA NMKDEMDQTN TDWLTRTTSK LKTYVTEVSE YLGSNPPRDP
501: YLDQQL

Arabidopsis Description

PIRL1Plant intracellular Ras-group-related LRR protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFJ3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.