Factsheet for GSMUA_Achr4P04360_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_19s0014g03000.t01	Wine grape	cytosol, mitochondrion	70.94	71.06
EES07794	Sorghum	cytosol	70.26	70.14
Os02t0826600-01	Rice	cytosol	70.26	70.14
HORVU6Hr1G093360.11	Barley	nucleus	44.27	69.81
TraesCS6D01G393300.1	Wheat	cytosol	69.91	69.8
TraesCS6B01G456300.1	Wheat	cytosol	69.4	69.4
KRH27219	Soybean	cytosol	68.72	68.6
Solyc10g006930.2.1	Tomato	cytosol	67.69	67.81
KRH22120	Soybean	cytosol	67.35	67.58
Bra027245.1-P	Field mustard	nucleus	66.32	66.32
CDY56828	Canola	nucleus	66.15	66.15
CDX97667	Canola	nucleus	65.81	65.81
AT3G15410.2	Thale cress	cytosol, mitochondrion, nucleus	66.32	65.76
Zm00001d018525_P004	Maize	cytosol	69.91	65.54
TraesCS6A01G410200.1	Wheat	cytosol, plasma membrane, plastid	69.91	63.12
GSMUA_Achr4P03290_001	Banana	cytosol	6.67	28.47
GSMUA_AchrUn_...	Banana	nucleus	15.21	26.18
GSMUA_Achr1P23570_001	Banana	nucleus	14.87	25.36
GSMUA_Achr4P03280_001	Banana	plastid	5.64	23.08
GSMUA_Achr1P13500_001	Banana	plastid	18.12	21.68
GSMUA_Achr8P28520_001	Banana	cytosol, nucleus, plastid	18.46	21.56
GSMUA_Achr5P07410_001	Banana	cytosol	13.68	21.05
GSMUA_Achr5P23850_001	Banana	cytosol	17.61	18.69
GSMUA_Achr4P19230_001	Banana	cytosol	15.38	17.27
GSMUA_Achr8P25490_001	Banana	nucleus	15.73	16.64
GSMUA_Achr4P21530_001	Banana	cytosol	14.87	16.38
GSMUA_Achr6P03430_001	Banana	nucleus	12.14	15.04

Protein Annotations

EnsemblPlants:GSMUA_Achr4P04360_001	EnsemblPlants:GSMUA_Achr4T04360_001	EnsemblPlantsGene:GSMUA_Achr4G04360_001	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR001611	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_typical-subtyp
PANTHER:PTHR44126	PFAM:PF13855	PFscan:PS51450	PRINTS:PR00019	SEG:seg	SMART:SM00364
SMART:SM00369	SUPFAM:SSF52058	UniParc:UPI000296231C	UniProt:M0SL03	MapMan:35.1	:

Description

Putative Leucine-rich repeat-containing protein 40 [Source:GMGC_GENE;Acc:GSMUA_Achr4G04360_001]

Coordinates

chr4:-:3417154..3427868

Molecular Weight (calculated)

64318.2 Da

IEP (calculated)

5.643

GRAVY (calculated)

-0.087

Length

585 amino acids

Sequence
(BLAST)

001: MERVIKAARS SGSLNLSNRS LKEVPEEIYR NLDSHGEDDK WWEAVELQKL ILAHNNLEVL NEDLKTLNML TVLNVSHNKL SSLPIAIGEL PLLKALDVSF
101: NLITSIPEEI GSVTSLVKLD CSSNQLKELP FSLGRCLDLS ELKASNNCLT KLPDELANCS KLIKLDVEGN KLTSFTEKML MSWTLLTEIN AARNFLTSIP
201: ESIGLLVKLI RLDFHQNKIS SIPSSIMGCS SLAEFYMGTN LLSSLPAEIG ALSRLGTLDL HSNQLKEYPV EACNLRLSVL DLSNNSLSGL PAEIGTMTSL
301: RKLLLAGNPI RTLRSSLVSG PTPILLKYLR SRLSADEESG SGTKTMKDDQ IARATRLSLS SKELNLSGLG LTTVPPTVWE TEDVVRVDLS KNSIEELPNE
401: LSTCSSLQAL TLSGNKIREW PGAVLSTLPN LSCLKLDNNP LVQITRNGLE SLTNIKILDL SGNKSSLPES FSFSSLPQLE ELYLRRMQLN EVPQGLLTLQ
501: RLQILDLSQN NLASMPKEIK GLTSLAELDL SDNNISILSP EMGLLEPSLQ VLKLDGNPLR SIRRPILDRG TKAILKYLKD KLPGQ

Best Arabidopsis Sequence Match ( AT3G15410.1 )
(BLAST)

001: MDRILKAART SGSLNLSNRS LKDVPTEVYQ CLETTGEGEN WWEAVDLQKL ILAHNDIEVL REDLKNLACL VVLNVSHNKL SQLPAAIGEL TAMKSLDVSF
101: NSISELPEQI GSAISLVKLD CSSNRLKELP DSIGRCLDLS DLKATNNQIS SLPEDMVNCS KLSKLDVEGN KLTALSENHI ASWTMLAELN ACKNMLGVLP
201: QNIGSLSRLI RLDLHQNKIS SVPPSIGGCS SLVEFYLGIN SLSTLPAEIG DLSRLGTLDL RSNQLKEYPV GACKLKLSYL DLSNNSLTGL HPELGNMTTL
301: RKLVLVGNPL RTLRSSLVNG PTAALLKYLR SRLSNSEETS ASTPTKENVI ASAARMSISS KELSLEGLNL SDVPSEVWES GEITKVNLSK NSIEELPAQL
401: STSVSLQTLI LSRNKIKDWP GAILKSLPNL MCLKLDNNPL NQIPLDGFQV VSGLQILDLS VNAVSFREHP KFCHLPQLRE LYLSRIQLSE VPEDILNLSN
501: LIILDLNQNS LQSIPKGIKN MTSLKHLDIS NNNISSLPPE LGLLEPTLEV LRLDGNPLRS IRRPILERGT KAVLNYLKDR LPDQ

Arabidopsis Description

Leucine-rich repeat (LRR) family protein [Source:UniProtKB/TrEMBL;Acc:F4IYR7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.