Factsheet for VIT_19s0014g03000.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 3
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH27219	Soybean	cytosol	76.71	76.45
KRH22120	Soybean	cytosol	76.2	76.33
Solyc10g006930.2.1	Tomato	cytosol	72.6	72.6
Bra027245.1-P	Field mustard	nucleus	72.43	72.31
CDY56828	Canola	nucleus	71.92	71.79
CDX97667	Canola	nucleus	71.92	71.79
GSMUA_Achr4P04360_001	Banana	cytosol	71.06	70.94
AT3G15410.2	Thale cress	cytosol, mitochondrion, nucleus	71.4	70.68
HORVU6Hr1G093360.11	Barley	nucleus	41.44	65.23
EES07794	Sorghum	cytosol	65.41	65.19
Os02t0826600-01	Rice	cytosol	64.9	64.68
TraesCS6D01G393300.1	Wheat	cytosol	64.38	64.16
TraesCS6B01G456300.1	Wheat	cytosol	63.87	63.76
Zm00001d018525_P004	Maize	cytosol	65.07	60.9
TraesCS6A01G410200.1	Wheat	cytosol, plasma membrane, plastid	64.38	58.02
VIT_17s0000g06940.t01	Wine grape	cytosol	13.36	29.89
VIT_11s0052g00390.t01	Wine grape	cytosol	13.36	25.32
VIT_17s0000g09230.t01	Wine grape	cytosol	16.95	22.05
VIT_06s0004g07050.t01	Wine grape	cytosol, plastid	11.99	18.42
VIT_07s0031g02310.t01	Wine grape	cytosol	17.47	18.31
VIT_02s0012g01010.t01	Wine grape	cytosol	15.07	16.51

Protein Annotations

EntrezGene:100252026	wikigene:100252026	Gene3D:3.80.10.10	MapMan:35.1	ProteinID:CBI20327	ProteinID:CBI20327.3
UniProt:E0CSM8	EMBL:FN595229	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001611
InterPro:IPR032675	EntrezGene:LOC100252026	wikigene:LOC100252026	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_typical-subtyp
PFAM:PF13855	PRINTS:PR00019	PFscan:PS51450	PANTHER:PTHR44126	SMART:SM00364	SMART:SM00369
SUPFAM:SSF52058	TIGR:TC71061	UniParc:UPI00015C7B4A	ArrayExpress:VIT_19s0014g03000	EnsemblPlantsGene:VIT_19s0014g03000	EnsemblPlants:VIT_19s0014g03000.t01
RefSeq:XP_002284846	RefSeq:XP_002284846.1	RefSeq:XP_003634682	RefSeq:XP_003634682.1	SEG:seg	:

Description

No Description!

Coordinates

chr19:+:3110507..3131347

Molecular Weight (calculated)

64011.9 Da

IEP (calculated)

5.816

GRAVY (calculated)

-0.036

Length

584 amino acids

Sequence
(BLAST)

001: MERALKAARA SGSLNLSNRA LREVPDEVYR SLDAIGEGEK WWEAVELQKL ILAHNDIESL REDLKNLSLL SVLNLSNNKL VHLPAAIGEL PMLKSLDLSQ
101: NSIVDIPEVI GSATSLVKLD CSNNKLKDLP NSLGRCSNLL ELKASNNCIT SLPEDLAHCL KLIKLDVEGN KLTMLSENMI ASWVLLTELN ASRNLLTGLP
201: ENIGRLSRLI RLDFHQNRIS SIPASIKGCC SLAEFYMGNN VLSSLTAEIG ALSLLGTLDL HSNQLKEYPV EACKLRLQVL DLSNNSLSGL PPEIGMMTTL
301: RKLVLTGNPL RTLRSSLVSG PTPALLKFLR SRLSTDEDSE AATTAKENVV TMAARISITS KELSLEGMGL SAVPAQVWES SEIVKVDLSR NSIQELPPEL
401: TSCVSLQALI LSRNKIQEWP GVILKSLPNL SCLKLDNNPL RQIPADGFQA VSKLQILDLS GNSASLPDNP AFSSLPQLQE LYLRRMQLCE VPSDILSLQQ
501: LQILDLSQNS LQLIPEGFKN LTSLTELNLS DNSIATLPPE LGLLEPSLQA LRLDGNPLRS IRRTILDRGT KAVLKYLKDK IPEH

Best Arabidopsis Sequence Match ( AT3G15410.1 )
(BLAST)

001: MDRILKAART SGSLNLSNRS LKDVPTEVYQ CLETTGEGEN WWEAVDLQKL ILAHNDIEVL REDLKNLACL VVLNVSHNKL SQLPAAIGEL TAMKSLDVSF
101: NSISELPEQI GSAISLVKLD CSSNRLKELP DSIGRCLDLS DLKATNNQIS SLPEDMVNCS KLSKLDVEGN KLTALSENHI ASWTMLAELN ACKNMLGVLP
201: QNIGSLSRLI RLDLHQNKIS SVPPSIGGCS SLVEFYLGIN SLSTLPAEIG DLSRLGTLDL RSNQLKEYPV GACKLKLSYL DLSNNSLTGL HPELGNMTTL
301: RKLVLVGNPL RTLRSSLVNG PTAALLKYLR SRLSNSEETS ASTPTKENVI ASAARMSISS KELSLEGLNL SDVPSEVWES GEITKVNLSK NSIEELPAQL
401: STSVSLQTLI LSRNKIKDWP GAILKSLPNL MCLKLDNNPL NQIPLDGFQV VSGLQILDLS VNAVSFREHP KFCHLPQLRE LYLSRIQLSE VPEDILNLSN
501: LIILDLNQNS LQSIPKGIKN MTSLKHLDIS NNNISSLPPE LGLLEPTLEV LRLDGNPLRS IRRPILERGT KAVLNYLKDR LPDQ

Arabidopsis Description

Leucine-rich repeat (LRR) family protein [Source:UniProtKB/TrEMBL;Acc:F4IYR7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.