Factsheet for VIT_17s0000g06940.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
extracellular 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, extracellular, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	extracellular
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH54661	Soybean	cytosol	83.52	83.52
KRH63260	Soybean	cytosol	83.52	83.52
Solyc03g115410.2.1	Tomato	cytosol	77.78	78.38
Solyc12g040320.1.1	Tomato	mitochondrion	76.25	76.25
PGSC0003DMT400063105	Potato	cytosol	76.25	75.95
CDY14024	Canola	mitochondrion	74.71	74.14
Bra028680.1-P	Field mustard	cytosol	74.71	73.86
CDY40770	Canola	cytosol	74.71	73.86
AT5G07910.1	Thale cress	cytosol	73.95	73.66
CDX81078	Canola	mitochondrion	72.8	72.52
Bra005960.1-P	Field mustard	cytosol, mitochondrion, nucleus	72.03	71.76
CDX78316	Canola	cytosol, mitochondrion, nucleus	72.03	71.76
GSMUA_Achr4P03290_001	Banana	cytosol	37.16	70.8
PGSC0003DMT400013776	Potato	cytosol	60.92	70.04
GSMUA_Achr4P03280_001	Banana	plastid	36.02	65.73
EER95291	Sorghum	cytosol	64.75	64.5
HORVU4Hr1G068710.2	Barley	cytosol, mitochondrion, nucleus, plastid	64.37	64.12
TraesCS4B01G249200.1	Wheat	cytosol, nucleus, plastid	64.37	64.12
TraesCS4D01G249500.1	Wheat	cytosol, mitochondrion	63.98	63.74
Os03t0212200-01	Rice	plasma membrane	30.65	56.34
Zm00001d028191_P002	Maize	cytosol	65.52	51.51
TraesCS4A01G055400.1	Wheat	nucleus	64.75	49.85
VIT_17s0000g09230.t01	Wine grape	cytosol	26.82	15.59
VIT_11s0052g00390.t01	Wine grape	cytosol	18.01	15.26
VIT_07s0031g02310.t01	Wine grape	cytosol	30.27	14.18
VIT_02s0012g01010.t01	Wine grape	cytosol	28.35	13.88
VIT_19s0014g03000.t01	Wine grape	cytosol, mitochondrion	29.89	13.36
VIT_06s0004g07050.t01	Wine grape	cytosol, plastid	16.86	11.58

Protein Annotations

EntrezGene:100267304	wikigene:100267304	Gene3D:3.80.10.10	MapMan:35.1	ProteinID:CBI15152	ProteinID:CBI15152.3
UniProt:D7SI42	EMBL:FN594950	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005623	GO:GO:0005886	GO:GO:0016020	InterPro:IPR001611	InterPro:IPR032675	EntrezGene:LOC100267304
wikigene:LOC100267304	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_typical-subtyp	PFAM:PF13855	PFscan:PS51450
PANTHER:PTHR45289	PANTHER:PTHR45289:SF1	SMART:SM00364	SMART:SM00369	SUPFAM:SSF52058	UniParc:UPI0001BE0B1B
ArrayExpress:VIT_17s0000g06940	EnsemblPlantsGene:VIT_17s0000g06940	EnsemblPlants:VIT_17s0000g06940.t01	RefSeq:XP_003634300	RefSeq:XP_003634300.1	RefSeq:XP_019082108.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr17:-:7615960..7632348

Molecular Weight (calculated)

29150.5 Da

IEP (calculated)

6.273

GRAVY (calculated)

-0.207

Length

261 amino acids

Sequence
(BLAST)

001: MGCCLSKNGD SKASRIGRWK STGIVALRDS KLKAFPDEVL DLDTSVRTLD LTHNRLVDIP MEISKLINMQ RLILADNLIE RLPMNLGKLQ SLKVMTLDGN
101: QVTTLPDELG MLVRLERLSI SGNLLTCLPE TIGSLRNLLL LNVSNNKLKC LPESVGSCFS LEELQANDNS IEDIPASFCN LIHLKSLCLN NNNINQIPPN
201: LLKDCKALQN ISLHDNPISM DQFQQMEGFQ AFETRRKKKF DKQIDSNVMI SSKGLDEGVD Q

Best Arabidopsis Sequence Match ( AT5G07910.1 )
(BLAST)

001: MGCCASNTAG GSKANRISRW RSTGIVGLRD SKLKTFPDEV IEMERAVRTL DLTHNKIADV PGEISKLINM QRLLIADNLV ERLPGNLGKL QSLKVLMLDG
101: NRISCLPDEL GQLVRLEQLS ISRNMLIYLP DTIGSLRNLL LLNVSNNRLK SLPESVGSCA SLEEVQANDN VVEELPASLC NLIQLKSLSL DNNQVNQIPD
201: GLLIHCKSLQ NLSLHNNPIS MDQFQLMEGY QDFEERRKKK FDKQIDSNVM MGSKALDVGV DK

Arabidopsis Description

Leucine-rich repeat (LRR) family protein [Source:UniProtKB/TrEMBL;Acc:Q8RWI2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.