Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 3
- cytosol 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra005960.1-P | Field mustard | cytosol, mitochondrion, nucleus | 100.0 | 100.0 |
| CDX81078 | Canola | mitochondrion | 95.42 | 95.42 |
| CDY14024 | Canola | mitochondrion | 93.89 | 93.54 |
| CDY40770 | Canola | cytosol | 93.89 | 93.18 |
| AT5G07910.1 | Thale cress | cytosol | 89.69 | 89.69 |
| KRH54661 | Soybean | cytosol | 74.05 | 74.33 |
| KRH63260 | Soybean | cytosol | 72.52 | 72.8 |
| VIT_17s0000g06940.t01 | Wine grape | cytosol | 71.76 | 72.03 |
| Solyc03g115410.2.1 | Tomato | cytosol | 68.7 | 69.5 |
| Solyc12g040320.1.1 | Tomato | mitochondrion | 67.94 | 68.2 |
| PGSC0003DMT400063105 | Potato | cytosol | 66.79 | 66.79 |
| PGSC0003DMT400013776 | Potato | cytosol | 54.96 | 63.44 |
| GSMUA_Achr4P03290_001 | Banana | cytosol | 32.82 | 62.77 |
| GSMUA_Achr4P03280_001 | Banana | plastid | 32.82 | 60.14 |
| EER95291 | Sorghum | cytosol | 59.54 | 59.54 |
| TraesCS4B01G249200.1 | Wheat | cytosol, nucleus, plastid | 58.02 | 58.02 |
| HORVU4Hr1G068710.2 | Barley | cytosol, mitochondrion, nucleus, plastid | 58.02 | 58.02 |
| TraesCS4D01G249500.1 | Wheat | cytosol, mitochondrion | 57.63 | 57.63 |
| Os03t0212200-01 | Rice | plasma membrane | 30.15 | 55.63 |
| Zm00001d028191_P002 | Maize | cytosol | 58.78 | 46.39 |
| TraesCS4A01G055400.1 | Wheat | nucleus | 58.4 | 45.13 |
| CDY30187 | Canola | nucleus | 19.08 | 17.92 |
| CDY00732 | Canola | cytosol | 26.34 | 16.05 |
| CDX72539 | Canola | nucleus | 24.05 | 16.03 |
| CDX73881 | Canola | cytosol | 25.95 | 15.81 |
| CDX89369 | Canola | cytosol, plastid | 23.66 | 15.58 |
| CDY42760 | Canola | cytosol, plastid | 23.28 | 15.44 |
| CDY69629 | Canola | cytosol | 19.85 | 15.29 |
| CDY26604 | Canola | cytosol | 26.72 | 15.12 |
| CDY16042 | Canola | cytosol | 26.72 | 15.12 |
| CDX70122 | Canola | cytosol | 27.86 | 15.11 |
| CDX98871 | Canola | cytosol | 27.86 | 15.11 |
| CDX94383 | Canola | cytosol | 22.9 | 15.08 |
| CDY46713 | Canola | nucleus | 20.99 | 15.03 |
| CDX82667 | Canola | nucleus, plastid | 21.76 | 14.84 |
| CDY39144 | Canola | nucleus, plastid | 21.76 | 14.84 |
| CDX92748 | Canola | cytosol, plasma membrane, plastid | 20.23 | 14.17 |
| CDY30364 | Canola | cytosol | 27.48 | 14.09 |
| CDY07843 | Canola | nucleus | 26.72 | 14.0 |
| CDY66405 | Canola | cytosol | 26.72 | 14.0 |
| CDY48988 | Canola | cytosol | 25.19 | 13.95 |
| CDY26809 | Canola | nucleus | 27.86 | 13.67 |
| CDY01012 | Canola | plastid | 24.81 | 13.6 |
| CDY08535 | Canola | plastid | 25.57 | 13.48 |
| CDX97667 | Canola | nucleus | 29.39 | 13.16 |
| CDX75505 | Canola | cytosol | 27.1 | 13.15 |
| CDY56828 | Canola | nucleus | 29.01 | 12.99 |
| CDX69142 | Canola | cytosol | 26.72 | 12.87 |
| CDY40632 | Canola | nucleus | 26.34 | 12.66 |
| CDX97851 | Canola | cytosol | 17.18 | 12.4 |
| CDY29703 | Canola | cytosol | 17.18 | 12.4 |
Protein Annotations
| EnsemblPlants:CDX78316 | EnsemblPlantsGene:GSBRNA2T00129671001 | Gene3D:3.80.10.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR001611 | InterPro:IPR032675 | InterPro:LRR_dom_sf | InterPro:Leu-rich_rpt | InterPro:Leu-rich_rpt_typical-subtyp | PANTHER:PTHR45289 |
| PANTHER:PTHR45289:SF1 | PFAM:PF13855 | PFscan:PS51450 | ProteinID:CDX78316 | ProteinID:CDX78316.1 | SEG:seg |
| SMART:SM00364 | SMART:SM00369 | SUPFAM:SSF52058 | UniParc:UPI000253F6D8 | MapMan:35.1 | : |
Description
BnaA03g02280D
Coordinates
chrLK031815:-:155652..157980
Molecular Weight (calculated)
29262.6 Da
IEP (calculated)
5.917
GRAVY (calculated)
-0.281
Length
262 amino acids
Sequence
(BLAST)
(BLAST)
001: MGCCASNPGG GSKASRVKRW RSTGIIGLRD SKLKTFPDVV IDMERAVRTL DLTHNKISDV PGEISKLINM QRLLIADNLI ERLPGNLGKL QSLKVLMLDG
101: NRISCLPDEL GQLIRLEQLS ISRNMLIYLP DTIGSLRNLV LLNVSNNRLK SLPESLGSCA SLEDVQANDN VVEELPESLC NLMQLKSLCL DDNQVKQIPD
201: GLLRDCKSLQ NLSLHNNPIS MDEFQLMEGY EEFEERRKKK FDKQIDSNVM ISSKGLDVGV DK
101: NRISCLPDEL GQLIRLEQLS ISRNMLIYLP DTIGSLRNLV LLNVSNNRLK SLPESLGSCA SLEDVQANDN VVEELPESLC NLMQLKSLCL DDNQVKQIPD
201: GLLRDCKSLQ NLSLHNNPIS MDEFQLMEGY EEFEERRKKK FDKQIDSNVM ISSKGLDVGV DK
001: MGCCASNTAG GSKANRISRW RSTGIVGLRD SKLKTFPDEV IEMERAVRTL DLTHNKIADV PGEISKLINM QRLLIADNLV ERLPGNLGKL QSLKVLMLDG
101: NRISCLPDEL GQLVRLEQLS ISRNMLIYLP DTIGSLRNLL LLNVSNNRLK SLPESVGSCA SLEEVQANDN VVEELPASLC NLIQLKSLSL DNNQVNQIPD
201: GLLIHCKSLQ NLSLHNNPIS MDQFQLMEGY QDFEERRKKK FDKQIDSNVM MGSKALDVGV DK
101: NRISCLPDEL GQLVRLEQLS ISRNMLIYLP DTIGSLRNLL LLNVSNNRLK SLPESVGSCA SLEEVQANDN VVEELPASLC NLIQLKSLSL DNNQVNQIPD
201: GLLIHCKSLQ NLSLHNNPIS MDQFQLMEGY QDFEERRKKK FDKQIDSNVM MGSKALDVGV DK
Arabidopsis Description
Leucine-rich repeat (LRR) family protein [Source:UniProtKB/TrEMBL;Acc:Q8RWI2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.