Factsheet for TraesCS4A01G055400.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G249200.1	Wheat	cytosol, nucleus, plastid	76.4	98.86
TraesCS4D01G249500.1	Wheat	cytosol, mitochondrion	75.52	97.71
HORVU4Hr1G068710.2	Barley	cytosol, mitochondrion, nucleus, plastid	72.86	94.27
EER95291	Sorghum	cytosol	67.55	87.4
Os03t0212200-01	Rice	plasma membrane	36.58	87.32
GSMUA_Achr4P03290_001	Banana	cytosol	30.38	75.18
Zm00001d028191_P002	Maize	cytosol	66.67	68.07
VIT_17s0000g06940.t01	Wine grape	cytosol	49.85	64.75
KRH54661	Soybean	cytosol	48.97	63.6
KRH63260	Soybean	cytosol	48.67	63.22
GSMUA_Achr4P03280_001	Banana	plastid	26.55	62.94
Solyc03g115410.2.1	Tomato	cytosol	46.9	61.39
Solyc12g040320.1.1	Tomato	mitochondrion	46.61	60.54
AT5G07910.1	Thale cress	cytosol	46.31	59.92
CDY14024	Canola	mitochondrion	46.31	59.7
CDY40770	Canola	cytosol	46.31	59.47
Bra028680.1-P	Field mustard	cytosol	46.31	59.47
CDX81078	Canola	mitochondrion	45.72	59.16
Bra005960.1-P	Field mustard	cytosol, mitochondrion, nucleus	45.13	58.4
CDX78316	Canola	cytosol, mitochondrion, nucleus	45.13	58.4
PGSC0003DMT400063105	Potato	cytosol	44.54	57.63
PGSC0003DMT400013776	Potato	cytosol	38.05	56.83
TraesCS2A01G432800.1	Wheat	cytosol, nucleus, plastid	17.99	16.71
TraesCS2A01G327100.1	Wheat	cytosol, plastid	20.65	13.92
TraesCS7A01G247900.2	Wheat	cytosol	22.42	13.33
TraesCS1A01G190500.1	Wheat	cytosol	20.35	12.92
TraesCS1A01G142500.1	Wheat	cytosol	12.39	11.26
TraesCS6A01G410200.1	Wheat	cytosol, plasma membrane, plastid	20.65	10.8

Protein Annotations

Gene3D:3.80.10.10	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005623	GO:GO:0005886	GO:GO:0016020	InterPro:IPR001611	InterPro:IPR032675	InterPro:LRR_dom_sf
InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_typical-subtyp	PFAM:PF13855	PFscan:PS51450	PANTHER:PTHR45289	PANTHER:PTHR45289:SF2
SMART:SM00364	SMART:SM00369	SUPFAM:SSF52058	EnsemblPlantsGene:TraesCS4A01G055400	EnsemblPlants:TraesCS4A01G055400.1	SEG:seg

Description

No Description!

Coordinates

chr4A:+:46277332..46282430

Molecular Weight (calculated)

37136.9 Da

IEP (calculated)

9.212

GRAVY (calculated)

-0.351

Length

339 amino acids

Sequence
(BLAST)

001: MPGKQYGAPQ PSGERHPAVA PADSEWTRSR QIPPAAPNCL HAEVVARPSP LKQNLFQNRR GKHLRVSPSR GRPAAAEMGC CSSRSSDSPA SRVTRWRSTG
101: IVALRDAKLK VVPQEVLQVG NSLRTLDLTN NKIVEVPQEV GTIVNMQRLV LAGNLIENIP ANIGYLRNLK ILTLDRNRIT VLPEELGSLS NLQQLTVSQN
201: SLLCLPKSVG DLCNMLLLNV SDNKLNALPE SIGGCKSLEE LQANGNTIED VPSSICNLAC LKSISLNGNK IRQLPPNLLK DCKALQNLSL HSNPISMDQF
301: QQMDGFGEFE ARRRKKFDKQ IDSNVMMGST ALDEGIDLR

Best Arabidopsis Sequence Match ( AT5G07910.1 )
(BLAST)

001: MGCCASNTAG GSKANRISRW RSTGIVGLRD SKLKTFPDEV IEMERAVRTL DLTHNKIADV PGEISKLINM QRLLIADNLV ERLPGNLGKL QSLKVLMLDG
101: NRISCLPDEL GQLVRLEQLS ISRNMLIYLP DTIGSLRNLL LLNVSNNRLK SLPESVGSCA SLEEVQANDN VVEELPASLC NLIQLKSLSL DNNQVNQIPD
201: GLLIHCKSLQ NLSLHNNPIS MDQFQLMEGY QDFEERRKKK FDKQIDSNVM MGSKALDVGV DK

Arabidopsis Description

Leucine-rich repeat (LRR) family protein [Source:UniProtKB/TrEMBL;Acc:Q8RWI2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.