Factsheet for TraesCS4D01G249500.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion
Any Predictor:	cytosol, mitochondrion
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G249200.1	Wheat	cytosol, nucleus, plastid	97.71	97.71
HORVU4Hr1G068710.2	Barley	cytosol, mitochondrion, nucleus, plastid	94.27	94.27
EER95291	Sorghum	cytosol	87.4	87.4
Os03t0212200-01	Rice	plasma membrane	46.56	85.92
GSMUA_Achr4P03290_001	Banana	cytosol	39.69	75.91
TraesCS4A01G055400.1	Wheat	nucleus	97.71	75.52
Zm00001d028191_P002	Maize	cytosol	86.26	68.07
VIT_17s0000g06940.t01	Wine grape	cytosol	63.74	63.98
KRH54661	Soybean	cytosol	62.6	62.84
KRH63260	Soybean	cytosol	62.21	62.45
GSMUA_Achr4P03280_001	Banana	plastid	33.59	61.54
Solyc03g115410.2.1	Tomato	cytosol	59.92	60.62
Solyc12g040320.1.1	Tomato	mitochondrion	59.54	59.77
AT5G07910.1	Thale cress	cytosol	59.16	59.16
CDY14024	Canola	mitochondrion	59.16	58.94
CDY40770	Canola	cytosol	59.16	58.71
Bra028680.1-P	Field mustard	cytosol	59.16	58.71
CDX81078	Canola	mitochondrion	58.4	58.4
Bra005960.1-P	Field mustard	cytosol, mitochondrion, nucleus	57.63	57.63
CDX78316	Canola	cytosol, mitochondrion, nucleus	57.63	57.63
PGSC0003DMT400013776	Potato	cytosol	49.62	57.27
PGSC0003DMT400063105	Potato	cytosol	56.87	56.87
TraesCS2D01G430800.1	Wheat	cytosol, nucleus, plastid	23.66	17.13
TraesCS6D01G191800.1	Wheat	plastid	26.72	14.2
TraesCS2D01G335800.1	Wheat	cytosol, plastid	27.1	14.14
TraesCS7D01G246700.1	Wheat	nucleus	30.15	13.86
TraesCS1D01G194700.1	Wheat	cytosol	27.1	13.32
TraesCS6D01G393300.1	Wheat	cytosol	25.95	11.6
TraesCS1D01G141500.1	Wheat	cytosol	16.41	11.53

Protein Annotations

Gene3D:3.80.10.10	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005623	GO:GO:0005886	GO:GO:0016020	InterPro:IPR001611	InterPro:IPR032675	InterPro:LRR_dom_sf
InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_typical-subtyp	PFAM:PF00560	PFAM:PF13855	PFscan:PS51450	PANTHER:PTHR45289
PANTHER:PTHR45289:SF2	SMART:SM00364	SMART:SM00369	SUPFAM:SSF52058	EnsemblPlantsGene:TraesCS4D01G249500	EnsemblPlants:TraesCS4D01G249500.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr4D:-:418569654..418574469

Molecular Weight (calculated)

28508.6 Da

IEP (calculated)

7.153

GRAVY (calculated)

-0.167

Length

262 amino acids

Sequence
(BLAST)

001: MGCCSSRSSD SPASRVTRWR STGIVALRDA XXQVVPHEVL QVGNSLRTLD LTNNKIVEVP QEVGTIVNMQ RLVLAGNLIE NIPANIGYLR NLKILTLDRN
101: RITVLPEELG SLSNLQQLTV SQNSLLCLPK SVGDLCNMLL LNVSDNKLNA LPESIGGCKS LEELQANGNA IEDVPSSICN LACLKSLSLN GNKIRQLPPN
201: LLKDCKALQN LSLHSNPISM DQFQQMDGFG EFEARRRKKF DKQIDSNVMM GSTALDEGID LR

Best Arabidopsis Sequence Match ( AT5G07910.1 )
(BLAST)

001: MGCCASNTAG GSKANRISRW RSTGIVGLRD SKLKTFPDEV IEMERAVRTL DLTHNKIADV PGEISKLINM QRLLIADNLV ERLPGNLGKL QSLKVLMLDG
101: NRISCLPDEL GQLVRLEQLS ISRNMLIYLP DTIGSLRNLL LLNVSNNRLK SLPESVGSCA SLEEVQANDN VVEELPASLC NLIQLKSLSL DNNQVNQIPD
201: GLLIHCKSLQ NLSLHNNPIS MDQFQLMEGY QDFEERRKKK FDKQIDSNVM MGSKALDVGV DK

Arabidopsis Description

Leucine-rich repeat (LRR) family protein [Source:UniProtKB/TrEMBL;Acc:Q8RWI2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.