Factsheet for PGSC0003DMT400013776

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
extracellular 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, extracellular, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	extracellular
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g040320.1.1	Tomato	mitochondrion	87.22	75.86
GSMUA_Achr4P03290_001	Banana	cytosol	39.21	64.96
PGSC0003DMT400063105	Potato	cytosol	74.89	64.89
VIT_17s0000g06940.t01	Wine grape	cytosol	70.04	60.92
KRH54661	Soybean	cytosol	69.16	60.15
KRH63260	Soybean	cytosol	69.16	60.15
CDY40770	Canola	cytosol	65.2	56.06
Bra028680.1-P	Field mustard	cytosol	65.2	56.06
CDY14024	Canola	mitochondrion	64.76	55.89
CDX81078	Canola	mitochondrion	63.88	55.34
CDX78316	Canola	cytosol, mitochondrion, nucleus	63.44	54.96
AT5G07910.1	Thale cress	cytosol	63.44	54.96
Bra005960.1-P	Field mustard	cytosol, mitochondrion, nucleus	63.44	54.96
TraesCS4D01G249500.1	Wheat	cytosol, mitochondrion	57.27	49.62
EER95291	Sorghum	cytosol	56.83	49.24
HORVU4Hr1G068710.2	Barley	cytosol, mitochondrion, nucleus, plastid	56.83	49.24
TraesCS4B01G249200.1	Wheat	cytosol, nucleus, plastid	56.83	49.24
Zm00001d028191_P002	Maize	cytosol	56.83	38.86
TraesCS4A01G055400.1	Wheat	nucleus	56.83	38.05
GSMUA_Achr4P03280_001	Banana	plastid	22.03	34.97
Os03t0212200-01	Rice	plasma membrane	21.15	33.8
PGSC0003DMT400016538	Potato	mitochondrion	25.11	15.7
PGSC0003DMT400052945	Potato	nucleus	20.26	12.23
PGSC0003DMT400046655	Potato	cytosol	28.19	12.17
PGSC0003DMT400059678	Potato	nucleus	30.4	12.13
PGSC0003DMT400052889	Potato	cytosol	22.47	11.94
PGSC0003DMT400035497	Potato	cytosol	29.07	11.54

Protein Annotations

EnsemblPlants:PGSC0003DMT400013776	EnsemblPlantsGene:PGSC0003DMG400005395	Gene3D:3.80.10.10	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt_typical-subtyp
PANTHER:PTHR45289	PANTHER:PTHR45289:SF2	PGSC:PGSC0003DMG400005395	SEG:seg	SMART:SM00364	SMART:SM00369
SUPFAM:SSF52058	UniParc:UPI0002958AAC	UniProt:M1A3C3	MapMan:35.1	:	:

Description

Leucine-rich repeat containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400005395]

Coordinates

chr12:+:29878423..29883150

Molecular Weight (calculated)

25431.1 Da

IEP (calculated)

6.893

GRAVY (calculated)

-0.132

Length

227 amino acids

Sequence
(BLAST)

001: MGCCVKANAS KEIRTRNHRH VGLEKIFRQV HEPLLCILVL ADNLIENLPV NLGLLKSLKV ATLDGNRIRA LPDELGQLVK LERLSVSANL LMSLPETIGR
101: LQNLVLLDIS NNKLKFFPES IGSCFSLEEL QANDNSIEEL PASVCNLVQL KSLCLNNNNL NQMPLNLLRE CKSLQTISLH GNPISMDQFQ QMDGFKDFEA
201: RRKQKFDKQI DSNVIISSKG LDEGVDL

Best Arabidopsis Sequence Match ( AT5G07910.1 )
(BLAST)

001: MGCCASNTAG GSKANRISRW RSTGIVGLRD SKLKTFPDEV IEMERAVRTL DLTHNKIADV PGEISKLINM QRLLIADNLV ERLPGNLGKL QSLKVLMLDG
101: NRISCLPDEL GQLVRLEQLS ISRNMLIYLP DTIGSLRNLL LLNVSNNRLK SLPESVGSCA SLEEVQANDN VVEELPASLC NLIQLKSLSL DNNQVNQIPD
201: GLLIHCKSLQ NLSLHNNPIS MDQFQLMEGY QDFEERRKKK FDKQIDSNVM MGSKALDVGV DK

Arabidopsis Description

Leucine-rich repeat (LRR) family protein [Source:UniProtKB/TrEMBL;Acc:Q8RWI2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.