Factsheet for PGSC0003DMT400035497

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
extracellular 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, extracellular, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	extracellular
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400044378

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G35470.1	PGSC0003DMT400044378	AT5G43400.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g082350.2.1	Tomato	nucleus	95.28	94.45
PGSC0003DMT400059678	Potato	nucleus	75.52	75.92
CDX72539	Canola	nucleus	46.5	67.68
VIT_07s0031g02310.t01	Wine grape	cytosol	65.21	66.97
KRH76512	Soybean	nucleus	67.13	66.9
KRH28950	Soybean	cytosol	65.03	65.61
KRH39397	Soybean	nucleus	62.94	65.34
KRH07815	Soybean	cytosol	62.24	64.96
CDY66405	Canola	cytosol	54.9	62.8
GSMUA_Achr5P23850_001	Banana	cytosol	60.31	62.61
Bra024514.1-P	Field mustard	cytosol	54.72	62.6
CDY07843	Canola	nucleus	54.72	62.6
CDY30364	Canola	cytosol	55.59	62.23
AT4G35470.1	Thale cress	nucleus	59.62	62.11
GSMUA_Achr8P25490_001	Banana	nucleus	59.97	62.03
AT2G17440.1	Thale cress	cytosol	56.82	61.79
CDX75505	Canola	cytosol	58.22	61.67
Bra037271.1-P	Field mustard	cytosol	55.42	61.55
CDY26809	Canola	nucleus	56.82	60.86
CDX69142	Canola	cytosol	57.87	60.85
Bra011617.1-P	Field mustard	cytosol	48.6	60.83
CDY40632	Canola	nucleus	56.99	59.82
Bra017712.1-P	Field mustard	nucleus	56.99	59.82
EES14257	Sorghum	nucleus	52.27	51.73
TraesCS7B01G143600.3	Wheat	nucleus	51.22	51.68
Os08t0511700-00	Rice	plasma membrane	51.4	51.22
Zm00001d031470_P001	Maize	plasma membrane	51.57	51.13
TraesCS7A01G247900.2	Wheat	cytosol	50.52	50.7
TraesCS7D01G246700.1	Wheat	nucleus	50.17	50.35
PGSC0003DMT400052889	Potato	cytosol	37.41	50.12
PGSC0003DMT400016538	Potato	mitochondrion	19.41	30.58
PGSC0003DMT400063105	Potato	cytosol	13.46	29.39
PGSC0003DMT400013776	Potato	cytosol	11.54	29.07
PGSC0003DMT400046655	Potato	cytosol	23.78	25.86
GSMUA_Achr6P03430_001	Banana	nucleus	21.15	25.64
PGSC0003DMT400052945	Potato	nucleus	13.64	20.74

Protein Annotations

EntrezGene:102602696	Gene3D:3.80.10.10	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001611	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_typical-subtyp	UniProt:M1B2D0
PFAM:PF13855	EnsemblPlantsGene:PGSC0003DMG400013644	PGSC:PGSC0003DMG400013644	EnsemblPlants:PGSC0003DMT400035497	PRINTS:PR00019	PFscan:PS51450
PANTHER:PTHR44513	PANTHER:PTHR44513:SF1	SMART:SM00364	SMART:SM00369	SUPFAM:SSF52058	UniParc:UPI00029625F4
RefSeq:XP_006364841.1	SEG:seg	:	:	:	:

Description

Leucine-rich repeat-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400013644]

Coordinates

chr2:+:38118826..38121877

Molecular Weight (calculated)

62897.7 Da

IEP (calculated)

5.802

GRAVY (calculated)

-0.224

Length

572 amino acids

Sequence
(BLAST)

001: MGSSGMSIDE IVQEIMRIHG SLPTRPSIDE VEGARGLIGN LEKEDQLKIE AIMRQNKRKG VPEELFKILQ EMQRNAVLFQ SKEQKREALK LLDLDNIHSV
101: FDDLIQRATK CLPSKSHDND PSSSLIEPND LSLANQVSFS GGGLNSPTTT TAAASSSSYY NSTEPIKASE LYSRDDSYLN KAKATFLVDG IGVGLRSGDA
201: LSGPKIVDST LKPASISGQD GEKLSLIKLA SMIEVSSKKG SRELILRNKL SDQVEWLPDS IGKLSSLITL DLSENRITVL PTTIGGLLSL QKLDLHSNKI
301: VELPDCIGDL LNLVYLDLSG NNLKLLPASF ARLAHLQELD LSSNMLSVLP ETIGSLVSLK KLIVETNDLE ELPHTIGQCT SLKELRVDYN HLKALPEAVG
401: RIESLEILTA RYNNIRLLPT TMSSLTSLKE LNVSFNEIES VPESLCFATS LVKLNISNNF ADLRSLPRSI GNLELLEELD MSNNQIRVLP DSFRMLSSLR
501: VLKTDGNPLE VPPGNIVEKG AQAVVQYMSD LVANREVKAQ PVKKKKKSWT QICCFSSSNK RQRNGSMDYV NA

Best Arabidopsis Sequence Match ( AT4G35470.1 )
(BLAST)

001: MDLMQMDKRL DSTEQVVEEI MRIHRSLPAR PGIDEVEAAK GLIDNVEKED QACLEAIARQ RKSSEVPGEL FMVLQEMKKG YVQFRSKEQI REALKLLDLE
101: SVHSLFDDFI QRASNCIASP SSNGSVSSRP PLPPATTTAA RSDSQSSLNF SERAPVRPKD MVSRDDSFVT KSKPSSLYSD GFAAPPRRPQ ILDSTLTTGN
201: DGEKLSLIKL ASLIEVSAKK ATQEINLQNK LTEQLEWLPD SLGKLSSLTS LDLSENHIVV LPNTIGGLSS LTKLDLHSNR IGQLPESIGE LLNLVYLNLG
301: SNQLSSLPSA FSRLVRLEEL DLSCNNLPIL PESIGSLVSL KKLDVETNDI EEIPYSIGGC SSLIELRADY NKLKALPEAI GKITTLEILS VRYNNIRQLP
401: TTMSSLASLK ELDVSFNELE SVPESLCFAT TLVKLNIGNN FADMVSLPRS IGNLEMLEEL DISNNQIRVL PDSFKMLTKL RVFRAQENPL HIPPRDIAEK
501: GPQAVVQYMN DLVETRNAKS LMVKPKKSWV QMCFFSKSNK RKQSSMEIV

Arabidopsis Description

PIRL4Plant intracellular Ras-group-related LRR protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVW8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.