Factsheet for Bra017712.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra033679.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G35470.1	Bra033679.1-P	AT5G43400.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY40632	Canola	nucleus	99.82	99.82
AT4G35470.1	Thale cress	nucleus	83.49	82.88
Bra011617.1-P	Field mustard	cytosol	68.07	81.18
Bra024514.1-P	Field mustard	cytosol	63.12	68.8
Bra037271.1-P	Field mustard	cytosol	63.3	66.99
KRH28950	Soybean	cytosol	65.32	62.79
KRH76512	Soybean	nucleus	66.06	62.72
KRH39397	Soybean	nucleus	63.12	62.43
KRH07815	Soybean	cytosol	62.39	62.04
VIT_07s0031g02310.t01	Wine grape	cytosol	63.12	61.76
GSMUA_Achr5P23850_001	Banana	cytosol	60.0	59.35
GSMUA_Achr8P25490_001	Banana	nucleus	59.45	58.59
PGSC0003DMT400059678	Potato	nucleus	59.82	57.29
PGSC0003DMT400035497	Potato	cytosol	59.82	56.99
Solyc02g082350.2.1	Tomato	nucleus	59.45	56.15
EES14257	Sorghum	nucleus	55.6	52.42
TraesCS7B01G143600.3	Wheat	nucleus	54.31	52.2
TraesCS7A01G247900.2	Wheat	cytosol	53.76	51.4
TraesCS7D01G246700.1	Wheat	nucleus	53.76	51.4
Zm00001d031470_P001	Maize	plasma membrane	54.31	51.3
Os08t0511700-00	Rice	plasma membrane	53.76	51.05
Bra024119.1-P	Field mustard	cytosol	19.45	28.96
Bra032935.1-P	Field mustard	plastid	22.75	27.8
Bra038857.1-P	Field mustard	nucleus, plastid	19.45	27.6
Bra013944.1-P	Field mustard	cytosol, plastid	19.63	26.88
Bra009140.1-P	Field mustard	cytosol	24.77	26.79
Bra026944.1-P	Field mustard	cytosol	22.75	26.78
Bra019126.1-P	Field mustard	cytosol, plastid	19.27	26.58
Bra005960.1-P	Field mustard	cytosol, mitochondrion, nucleus	12.66	26.34
Bra001399.1-P	Field mustard	plastid	24.04	26.31
Bra028680.1-P	Field mustard	cytosol	12.66	26.14
Bra034849.1-P	Field mustard	plastid	23.67	25.96
GSMUA_Achr6P03430_001	Banana	nucleus	21.28	24.58
Bra021606.1-P	Field mustard	cytosol	13.58	20.39
Bra027245.1-P	Field mustard	nucleus	16.88	15.73
Bra034850.1-P	Field mustard	nucleus	1.28	11.11

Protein Annotations

Gene3D:3.80.10.10	MapMan:35.1	EnsemblPlantsGene:Bra017712	EnsemblPlants:Bra017712.1	EnsemblPlants:Bra017712.1-P	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR001611	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt
InterPro:Leu-rich_rpt_typical-subtyp	UniProt:M4DMH7	PFAM:PF00560	PFAM:PF13516	PFAM:PF13855	PRINTS:PR00019
PFscan:PS51450	PANTHER:PTHR44513	PANTHER:PTHR44513:SF1	SMART:SM00364	SMART:SM00369	SUPFAM:SSF52058
UniParc:UPI0002540B58	SEG:seg	:	:	:	:

Description

AT4G35470 (E=2e-237) | leucine-rich repeat family protein

Coordinates

chrA03:+:29939086..29941203

Molecular Weight (calculated)

60715.1 Da

IEP (calculated)

6.443

GRAVY (calculated)

-0.289

Length

545 amino acids

Sequence
(BLAST)

001: MDSMQLDKRL DSTEQVVEEI MRLHRSLPPR PGLDDVEAAR SLILNVEQED QAWLEAIANQ RKPSDVPGDL FTVLQEMKKG LVLFRSKEQR REATKLLDLE
101: TVHSSFDEFI QRASHCIASP SSNGSAPSCP PRVPKPPASL YLSEKAPVRP KEMVSRDDSF VTTKAKPSSL YGDALVAHRS PQLLDSTLTT GKFAGNDGDN
201: LSLIKLASLI EVSSKKATKV LNLQNKLTEQ VEWLPDSIGK LSSLTSLDLS ENHIVVLPNT IGKLSSLTKL NLHSNRITHL PESIGELLNL VYLNLSSNQL
301: SSLPSSFSKL SQLEELDLSC NNLPILPESI GSLANLKKLD VETNEIEEFP YSIGGCSSLK EVRADYNKLK ALPEAIGKIT TLEILSVRYN NIRQLPTTMS
401: SLASLKEVDV SFNELESVPE SLCFATTLVK LNVGNNFADM VSLPRSIGNL ELLEELDISN NQIRVLPESF RMLTKLRVFR AHENPLQVPP RDVAEKGPQA
501: VIQYMNDLVE MRNEKSLVVK PKKSWVQMCF FPKSNKRKHN SMEIV

Best Arabidopsis Sequence Match ( AT4G35470.1 )
(BLAST)

001: MDLMQMDKRL DSTEQVVEEI MRIHRSLPAR PGIDEVEAAK GLIDNVEKED QACLEAIARQ RKSSEVPGEL FMVLQEMKKG YVQFRSKEQI REALKLLDLE
101: SVHSLFDDFI QRASNCIASP SSNGSVSSRP PLPPATTTAA RSDSQSSLNF SERAPVRPKD MVSRDDSFVT KSKPSSLYSD GFAAPPRRPQ ILDSTLTTGN
201: DGEKLSLIKL ASLIEVSAKK ATQEINLQNK LTEQLEWLPD SLGKLSSLTS LDLSENHIVV LPNTIGGLSS LTKLDLHSNR IGQLPESIGE LLNLVYLNLG
301: SNQLSSLPSA FSRLVRLEEL DLSCNNLPIL PESIGSLVSL KKLDVETNDI EEIPYSIGGC SSLIELRADY NKLKALPEAI GKITTLEILS VRYNNIRQLP
401: TTMSSLASLK ELDVSFNELE SVPESLCFAT TLVKLNIGNN FADMVSLPRS IGNLEMLEEL DISNNQIRVL PDSFKMLTKL RVFRAQENPL HIPPRDIAEK
501: GPQAVVQYMN DLVETRNAKS LMVKPKKSWV QMCFFSKSNK RKQSSMEIV

Arabidopsis Description

PIRL4Plant intracellular Ras-group-related LRR protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVW8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.