Factsheet for Bra005960.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

plastid 1
mitochondrion 3
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78316	Canola	cytosol, mitochondrion, nucleus	100.0	100.0
Bra028680.1-P	Field mustard	cytosol	93.89	93.18
AT5G07910.1	Thale cress	cytosol	89.69	89.69
KRH54661	Soybean	cytosol	74.05	74.33
KRH63260	Soybean	cytosol	72.52	72.8
VIT_17s0000g06940.t01	Wine grape	cytosol	71.76	72.03
Solyc03g115410.2.1	Tomato	cytosol	68.7	69.5
Solyc12g040320.1.1	Tomato	mitochondrion	67.94	68.2
PGSC0003DMT400063105	Potato	cytosol	66.79	66.79
PGSC0003DMT400013776	Potato	cytosol	54.96	63.44
GSMUA_Achr4P03290_001	Banana	cytosol	32.82	62.77
GSMUA_Achr4P03280_001	Banana	plastid	32.82	60.14
EER95291	Sorghum	cytosol	59.54	59.54
TraesCS4B01G249200.1	Wheat	cytosol, nucleus, plastid	58.02	58.02
HORVU4Hr1G068710.2	Barley	cytosol, mitochondrion, nucleus, plastid	58.02	58.02
TraesCS4D01G249500.1	Wheat	cytosol, mitochondrion	57.63	57.63
Os03t0212200-01	Rice	plasma membrane	30.15	55.63
Zm00001d028191_P002	Maize	cytosol	58.78	46.39
TraesCS4A01G055400.1	Wheat	nucleus	58.4	45.13
Bra019126.1-P	Field mustard	cytosol, plastid	23.28	15.44
Bra013944.1-P	Field mustard	cytosol, plastid	23.28	15.33
Bra026944.1-P	Field mustard	cytosol	26.72	15.12
Bra024119.1-P	Field mustard	cytosol	20.99	15.03
Bra038857.1-P	Field mustard	nucleus, plastid	21.76	14.84
Bra009140.1-P	Field mustard	cytosol	28.24	14.68
Bra032935.1-P	Field mustard	plastid	24.81	14.57
Bra011617.1-P	Field mustard	cytosol	25.19	14.44
Bra024514.1-P	Field mustard	cytosol	26.72	14.0
Bra001399.1-P	Field mustard	plastid	26.34	13.86
Bra037271.1-P	Field mustard	cytosol	27.1	13.79
Bra034849.1-P	Field mustard	plastid	25.95	13.68
Bra027245.1-P	Field mustard	nucleus	29.39	13.16
Bra017712.1-P	Field mustard	nucleus	26.34	12.66
Bra021606.1-P	Field mustard	cytosol	17.18	12.4
Bra034850.1-P	Field mustard	nucleus	1.91	7.94

Protein Annotations

EnsemblPlants:Bra005960.1	EnsemblPlants:Bra005960.1-P	EnsemblPlantsGene:Bra005960	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR001611	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_typical-subtyp
PANTHER:PTHR45289	PANTHER:PTHR45289:SF1	PFAM:PF13855	PFscan:PS51450	SEG:seg	SMART:SM00364
SMART:SM00369	SUPFAM:SSF52058	UniParc:UPI000253F6D8	UniProt:M4CP22	MapMan:35.1	:

Description

AT5G07910 (E=1e-115) | leucine-rich repeat family protein

Coordinates

chrA03:-:1416407..1418108

Molecular Weight (calculated)

29262.6 Da

IEP (calculated)

5.917

GRAVY (calculated)

-0.281

Length

262 amino acids

Sequence
(BLAST)

001: MGCCASNPGG GSKASRVKRW RSTGIIGLRD SKLKTFPDVV IDMERAVRTL DLTHNKISDV PGEISKLINM QRLLIADNLI ERLPGNLGKL QSLKVLMLDG
101: NRISCLPDEL GQLIRLEQLS ISRNMLIYLP DTIGSLRNLV LLNVSNNRLK SLPESLGSCA SLEDVQANDN VVEELPESLC NLMQLKSLCL DDNQVKQIPD
201: GLLRDCKSLQ NLSLHNNPIS MDEFQLMEGY EEFEERRKKK FDKQIDSNVM ISSKGLDVGV DK

Best Arabidopsis Sequence Match ( AT5G07910.1 )
(BLAST)

001: MGCCASNTAG GSKANRISRW RSTGIVGLRD SKLKTFPDEV IEMERAVRTL DLTHNKIADV PGEISKLINM QRLLIADNLV ERLPGNLGKL QSLKVLMLDG
101: NRISCLPDEL GQLVRLEQLS ISRNMLIYLP DTIGSLRNLL LLNVSNNRLK SLPESVGSCA SLEEVQANDN VVEELPASLC NLIQLKSLSL DNNQVNQIPD
201: GLLIHCKSLQ NLSLHNNPIS MDQFQLMEGY QDFEERRKKK FDKQIDSNVM MGSKALDVGV DK

Arabidopsis Description

Leucine-rich repeat (LRR) family protein [Source:UniProtKB/TrEMBL;Acc:Q8RWI2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.