Factsheet for HORVU4Hr1G068710.2

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
mitochondrion 3
cytosol 1
extracellular 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G249500.1	Wheat	cytosol, mitochondrion	94.27	94.27
TraesCS4B01G249200.1	Wheat	cytosol, nucleus, plastid	93.89	93.89
EER95291	Sorghum	cytosol	87.79	87.79
Os03t0212200-01	Rice	plasma membrane	46.95	86.62
GSMUA_Achr4P03290_001	Banana	cytosol	40.08	76.64
TraesCS4A01G055400.1	Wheat	nucleus	94.27	72.86
Zm00001d028191_P002	Maize	cytosol	86.26	68.07
VIT_17s0000g06940.t01	Wine grape	cytosol	64.12	64.37
KRH54661	Soybean	cytosol	62.21	62.45
KRH63260	Soybean	cytosol	61.83	62.07
Solyc03g115410.2.1	Tomato	cytosol	59.92	60.62
GSMUA_Achr4P03280_001	Banana	plastid	32.82	60.14
Solyc12g040320.1.1	Tomato	mitochondrion	59.54	59.77
CDY14024	Canola	mitochondrion	59.54	59.32
CDY40770	Canola	cytosol	59.54	59.09
Bra028680.1-P	Field mustard	cytosol	59.54	59.09
AT5G07910.1	Thale cress	cytosol	58.78	58.78
CDX81078	Canola	mitochondrion	58.4	58.4
Bra005960.1-P	Field mustard	cytosol, mitochondrion, nucleus	58.02	58.02
CDX78316	Canola	cytosol, mitochondrion, nucleus	58.02	58.02
PGSC0003DMT400063105	Potato	cytosol	56.87	56.87
PGSC0003DMT400013776	Potato	cytosol	49.24	56.83
HORVU7Hr1G066320.3	Barley	cytosol	19.47	18.21
HORVU6Hr1G093360.11	Barley	nucleus	23.28	16.44
HORVU2Hr1G082540.6	Barley	cytosol, mitochondrion	25.19	16.1
HORVU2Hr1G101090.6	Barley	plastid	23.66	14.69
HORVU6Hr1G053210.1	Barley	cytosol, plastid	28.24	14.34
HORVU1Hr1G037810.14	Barley	cytosol, nucleus, peroxisome	17.56	12.33
HORVU1Hr1G049900.1	Barley	cytosol, extracellular, mitochondrion, plastid	26.34	12.04
HORVU6Hr1G093540.7	Barley	cytosol	3.44	3.77

Protein Annotations

Gene3D:3.80.10.10	MapMan:35.1	EMBL:AK362922	EMBL:AK372181	UniProt:F2DGA5	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0016020
EnsemblPlantsGene:HORVU4Hr1G068710	EnsemblPlants:HORVU4Hr1G068710.2	InterPro:IPR001611	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt
InterPro:Leu-rich_rpt_typical-subtyp	PFAM:PF13855	PFscan:PS51450	PANTHER:PTHR45289	PANTHER:PTHR45289:SF2	SMART:SM00364
SMART:SM00369	SUPFAM:SSF52058	UniParc:UPI000200680D	SEG:seg	:	:

Description

Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2DGA5]

Coordinates

chrchr4H:+:566805768..566810877

Molecular Weight (calculated)

28924.1 Da

IEP (calculated)

7.977

GRAVY (calculated)

-0.192

Length

262 amino acids

Sequence
(BLAST)

001: MGCCSSRSSD SPASRVTRWR STGIVALRDA RLKAVPNEVL QVGNTLRTLD LTNNKIVEIP QEVGTIVHMQ RLVLAGNLIE NIPANIGYLR NLKILTLDRN
101: RITVLPEELC SLSNLQQLTL SQNSLLCLPK SVGDLSNMLL LNVSDNKLNA LPESIGGCKS LEELQANGNA IEDVPSSICN LACLKSLSLN GNKIRQLPQN
201: LLKDCKALQN LSLHNNPISM DQFQQMDGFA EFEARRRKKF DKQIDSNVMM SSTALDEGID LR

Best Arabidopsis Sequence Match ( AT5G07910.1 )
(BLAST)

001: MGCCASNTAG GSKANRISRW RSTGIVGLRD SKLKTFPDEV IEMERAVRTL DLTHNKIADV PGEISKLINM QRLLIADNLV ERLPGNLGKL QSLKVLMLDG
101: NRISCLPDEL GQLVRLEQLS ISRNMLIYLP DTIGSLRNLL LLNVSNNRLK SLPESVGSCA SLEEVQANDN VVEELPASLC NLIQLKSLSL DNNQVNQIPD
201: GLLIHCKSLQ NLSLHNNPIS MDQFQLMEGY QDFEERRKKK FDKQIDSNVM MGSKALDVGV DK

Arabidopsis Description

Leucine-rich repeat (LRR) family protein [Source:UniProtKB/TrEMBL;Acc:Q8RWI2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.