Factsheet for TraesCS4B01G249200.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

mitochondrion 2
cytosol 1
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G249500.1	Wheat	cytosol, mitochondrion	97.71	97.71
HORVU4Hr1G068710.2	Barley	cytosol, mitochondrion, nucleus, plastid	93.89	93.89
EER95291	Sorghum	cytosol	87.02	87.02
Os03t0212200-01	Rice	plasma membrane	46.95	86.62
TraesCS4A01G055400.1	Wheat	nucleus	98.86	76.4
GSMUA_Achr4P03290_001	Banana	cytosol	39.31	75.18
Zm00001d028191_P002	Maize	cytosol	85.88	67.77
VIT_17s0000g06940.t01	Wine grape	cytosol	64.12	64.37
KRH54661	Soybean	cytosol	62.98	63.22
GSMUA_Achr4P03280_001	Banana	plastid	34.35	62.94
KRH63260	Soybean	cytosol	62.6	62.84
Solyc03g115410.2.1	Tomato	cytosol	60.69	61.39
Solyc12g040320.1.1	Tomato	mitochondrion	60.69	60.92
AT5G07910.1	Thale cress	cytosol	59.92	59.92
CDY14024	Canola	mitochondrion	59.54	59.32
CDY40770	Canola	cytosol	59.54	59.09
Bra028680.1-P	Field mustard	cytosol	59.54	59.09
CDX81078	Canola	mitochondrion	58.78	58.78
Bra005960.1-P	Field mustard	cytosol, mitochondrion, nucleus	58.02	58.02
CDX78316	Canola	cytosol, mitochondrion, nucleus	58.02	58.02
PGSC0003DMT400063105	Potato	cytosol	57.63	57.63
PGSC0003DMT400013776	Potato	cytosol	49.24	56.83
TraesCS2B01G454100.1	Wheat	cytosol, nucleus, plastid	22.9	16.57
TraesCS7B01G143600.3	Wheat	nucleus	30.53	14.11
TraesCS2B01G354900.1	Wheat	plastid	26.72	13.94
TraesCS1B01G205800.2	Wheat	cytosol	27.1	13.27
TraesCS1B01G159200.1	Wheat	cytosol	16.79	11.8
TraesCS6B01G456300.1	Wheat	cytosol	26.34	11.79

Protein Annotations

EnsemblPlants:TraesCS4B01G249200.1	EnsemblPlantsGene:TraesCS4B01G249200	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0016020	InterPro:IPR001611	InterPro:IPR032675
InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_typical-subtyp	PANTHER:PTHR45289	PANTHER:PTHR45289:SF2	PFAM:PF13855
PFscan:PS51450	SMART:SM00364	SMART:SM00369	SUPFAM:SSF52058	MapMan:35.1	:

Description

No Description!

Coordinates

chr4B:-:515052939..515057495

Molecular Weight (calculated)

28780.0 Da

IEP (calculated)

7.977

GRAVY (calculated)

-0.176

Length

262 amino acids

Sequence
(BLAST)

001: MGCCSSRSSD SPATRVTRWR STGIVALRDA KLKVVPHEVL QVGNSLRTLD LTNNKIVEVP QEVGTIVNMQ RLVLAGNLIE NIPANIGYLR NLKILTLDRN
101: RITVLPEELG SLSNLQQLTV SQNSLLCLPK SVGDLCNMLL LNVSDNKLNA LPESIGGCKS LEELQANGNT IEDVPSSICN LACLKSVSLN GNKIRQLPPN
201: LLKDCKALQN LSLHSNPISM DQFQQMDGFG EFEARRRKKF DKQIDSNVMM GSTALDEGID LR

Best Arabidopsis Sequence Match ( AT5G07910.1 )
(BLAST)

001: MGCCASNTAG GSKANRISRW RSTGIVGLRD SKLKTFPDEV IEMERAVRTL DLTHNKIADV PGEISKLINM QRLLIADNLV ERLPGNLGKL QSLKVLMLDG
101: NRISCLPDEL GQLVRLEQLS ISRNMLIYLP DTIGSLRNLL LLNVSNNRLK SLPESVGSCA SLEEVQANDN VVEELPASLC NLIQLKSLSL DNNQVNQIPD
201: GLLIHCKSLQ NLSLHNNPIS MDQFQLMEGY QDFEERRKKK FDKQIDSNVM MGSKALDVGV DK

Arabidopsis Description

Leucine-rich repeat (LRR) family protein [Source:UniProtKB/TrEMBL;Acc:Q8RWI2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.