Factsheet for Bra011617.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
extracellular 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra033679.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G35470.1	Bra033679.1-P	AT5G43400.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX75505	Canola	cytosol	89.5	75.74
CDX69142	Canola	cytosol	90.15	75.74
Bra017712.1-P	Field mustard	nucleus	81.18	68.07
AT4G35470.1	Thale cress	nucleus	78.77	65.57
Bra037271.1-P	Field mustard	cytosol	63.68	56.5
Bra024514.1-P	Field mustard	cytosol	61.27	56.0
VIT_07s0031g02310.t01	Wine grape	cytosol	63.24	51.89
KRH39397	Soybean	nucleus	62.36	51.72
KRH28950	Soybean	cytosol	64.11	51.68
KRH07815	Soybean	cytosol	61.93	51.64
KRH76512	Soybean	nucleus	64.33	51.22
PGSC0003DMT400035497	Potato	cytosol	60.83	48.6
GSMUA_Achr5P23850_001	Banana	cytosol	57.99	48.09
PGSC0003DMT400059678	Potato	nucleus	59.52	47.8
GSMUA_Achr8P25490_001	Banana	nucleus	57.77	47.74
Solyc02g082350.2.1	Tomato	nucleus	59.74	47.31
TraesCS7B01G143600.3	Wheat	nucleus	56.46	45.5
EES14257	Sorghum	nucleus	57.11	45.16
Os08t0511700-00	Rice	plasma membrane	56.02	44.6
TraesCS7A01G247900.2	Wheat	cytosol	55.58	44.56
TraesCS7D01G246700.1	Wheat	nucleus	55.58	44.56
Zm00001d031470_P001	Maize	plasma membrane	56.02	44.37
Bra024119.1-P	Field mustard	cytosol	23.19	28.96
Bra038857.1-P	Field mustard	nucleus, plastid	23.63	28.12
Bra013944.1-P	Field mustard	cytosol, plastid	23.63	27.14
Bra019126.1-P	Field mustard	cytosol, plastid	23.41	27.09
Bra032935.1-P	Field mustard	plastid	25.82	26.46
Bra028680.1-P	Field mustard	cytosol	14.88	25.76
Bra026944.1-P	Field mustard	cytosol	25.6	25.27
Bra005960.1-P	Field mustard	cytosol, mitochondrion, nucleus	14.44	25.19
Bra009140.1-P	Field mustard	cytosol	27.35	24.8
Bra034849.1-P	Field mustard	plastid	26.04	23.94
GSMUA_Achr6P03430_001	Banana	nucleus	24.73	23.94
Bra001399.1-P	Field mustard	plastid	25.38	23.29
Bra021606.1-P	Field mustard	cytosol	14.22	17.91
Bra027245.1-P	Field mustard	nucleus	20.13	15.73
Bra034850.1-P	Field mustard	nucleus	1.31	9.52

Protein Annotations

Gene3D:3.80.10.10	MapMan:35.1	EnsemblPlantsGene:Bra011617	EnsemblPlants:Bra011617.1	EnsemblPlants:Bra011617.1-P	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR001611	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt
InterPro:Leu-rich_rpt_typical-subtyp	UniProt:M4D560	PFAM:PF00560	PFAM:PF13855	PRINTS:PR00019	PFscan:PS51450
PANTHER:PTHR44513	PANTHER:PTHR44513:SF1	SMART:SM00364	SMART:SM00369	SUPFAM:SSF52058	UniParc:UPI0002546F70
SEG:seg	:	:	:	:	:

Description

AT4G35470 (E=6e-178) | leucine-rich repeat family protein

Coordinates

chrA01:-:1393494..1397022

Molecular Weight (calculated)

50037.9 Da

IEP (calculated)

5.138

GRAVY (calculated)

-0.268

Length

457 amino acids

Sequence
(BLAST)

001: MELSEPPRSG SLSGAAELTK PPQPGNLSGV AGARGASTSR DQNDAETKIY QTLYLNEKTP ARPKEMVSRD DSFVSKAKPS LYDDGFVAPR APQVVDSTLT
101: AGKFAGGNDG DKLSLIKLAS LIEVSSKKAT KELNLQNKLS EQVEWLPDSI GKLSTLTSLD LSENHIVVLP NTIGGLSSLT NLDLRSNRIT HLPESIGELI
201: NLVSLNLSGN QLSSLPSSFS RLLQLEELNL SCNNLPVLPE SIGSLANLKK LDVETNDIEE IPYSIGGCSS LTELRADYNK LKALPEAIGK ITTLEILSVR
301: YNNIRQLPTT MSSLSSLKEL DVSFNELESV PESLCFATAL VKLNVGNNFA DMVSLPRSIG NLEMLEELDI SNNQIRVLPE SFRMLTELRV FRAQENPLQV
401: PPREVAEKGP QAVVQYLNDL VEQRNAKSLV VKPKKSWVQM CFFSKSNKKK QSNMEIV

Best Arabidopsis Sequence Match ( AT4G35470.1 )
(BLAST)

001: MDLMQMDKRL DSTEQVVEEI MRIHRSLPAR PGIDEVEAAK GLIDNVEKED QACLEAIARQ RKSSEVPGEL FMVLQEMKKG YVQFRSKEQI REALKLLDLE
101: SVHSLFDDFI QRASNCIASP SSNGSVSSRP PLPPATTTAA RSDSQSSLNF SERAPVRPKD MVSRDDSFVT KSKPSSLYSD GFAAPPRRPQ ILDSTLTTGN
201: DGEKLSLIKL ASLIEVSAKK ATQEINLQNK LTEQLEWLPD SLGKLSSLTS LDLSENHIVV LPNTIGGLSS LTKLDLHSNR IGQLPESIGE LLNLVYLNLG
301: SNQLSSLPSA FSRLVRLEEL DLSCNNLPIL PESIGSLVSL KKLDVETNDI EEIPYSIGGC SSLIELRADY NKLKALPEAI GKITTLEILS VRYNNIRQLP
401: TTMSSLASLK ELDVSFNELE SVPESLCFAT TLVKLNIGNN FADMVSLPRS IGNLEMLEEL DISNNQIRVL PDSFKMLTKL RVFRAQENPL HIPPRDIAEK
501: GPQAVVQYMN DLVETRNAKS LMVKPKKSWV QMCFFSKSNK RKQSSMEIV

Arabidopsis Description

PIRL4Plant intracellular Ras-group-related LRR protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVW8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.