Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- extracellular 1
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
PGSC0003DMT400044378 |
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT4G35470.1 | PGSC0003DMT400044378 | AT5G43400.1 | 21798944 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
PGSC0003DMT400035497 | Potato | cytosol | 75.92 | 75.52 |
VIT_07s0031g02310.t01 | Wine grape | cytosol | 65.38 | 66.79 |
KRH76512 | Soybean | nucleus | 66.43 | 65.85 |
CDX72539 | Canola | nucleus | 45.34 | 65.65 |
KRH28950 | Soybean | cytosol | 65.2 | 65.43 |
KRH39397 | Soybean | nucleus | 63.27 | 65.34 |
KRH07815 | Soybean | cytosol | 62.92 | 65.33 |
GSMUA_Achr5P23850_001 | Banana | cytosol | 62.74 | 64.79 |
GSMUA_Achr8P25490_001 | Banana | nucleus | 62.57 | 64.38 |
AT4G35470.1 | Thale cress | nucleus | 61.69 | 63.93 |
CDY66405 | Canola | cytosol | 55.54 | 63.2 |
Bra024514.1-P | Field mustard | cytosol | 55.36 | 63.0 |
CDY07843 | Canola | nucleus | 55.01 | 62.6 |
CDX75505 | Canola | cytosol | 58.88 | 62.04 |
CDY30364 | Canola | cytosol | 55.36 | 61.64 |
AT2G17440.1 | Thale cress | cytosol | 56.94 | 61.6 |
Bra037271.1-P | Field mustard | cytosol | 55.71 | 61.55 |
CDX69142 | Canola | cytosol | 58.35 | 61.03 |
CDY26809 | Canola | nucleus | 56.94 | 60.67 |
CDY40632 | Canola | nucleus | 57.47 | 60.0 |
Bra017712.1-P | Field mustard | nucleus | 57.29 | 59.82 |
Bra011617.1-P | Field mustard | cytosol | 47.8 | 59.52 |
TraesCS7B01G143600.3 | Wheat | nucleus | 52.9 | 53.09 |
EES14257 | Sorghum | nucleus | 53.6 | 52.77 |
TraesCS7D01G246700.1 | Wheat | nucleus | 52.2 | 52.11 |
Zm00001d031470_P001 | Maize | plasma membrane | 52.72 | 51.99 |
TraesCS7A01G247900.2 | Wheat | cytosol | 52.02 | 51.93 |
Os08t0511700-00 | Rice | plasma membrane | 51.32 | 50.87 |
PGSC0003DMT400052889 | Potato | cytosol | 36.03 | 48.01 |
PGSC0003DMT400013776 | Potato | cytosol | 12.13 | 30.4 |
PGSC0003DMT400016538 | Potato | mitochondrion | 18.98 | 29.75 |
PGSC0003DMT400063105 | Potato | cytosol | 13.18 | 28.63 |
GSMUA_Achr6P03430_001 | Banana | nucleus | 21.09 | 25.42 |
PGSC0003DMT400046655 | Potato | cytosol | 23.2 | 25.1 |
PGSC0003DMT400052945 | Potato | nucleus | 13.71 | 20.74 |
Protein Annotations
EntrezGene:102591117 | Gene3D:3.80.10.10 | MapMan:35.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
InterPro:IPR001611 | InterPro:IPR032675 | InterPro:LRR_dom_sf | InterPro:Leu-rich_rpt | InterPro:Leu-rich_rpt_typical-subtyp | UniProt:M1C4K7 |
PFAM:PF13855 | EnsemblPlantsGene:PGSC0003DMG400023198 | PGSC:PGSC0003DMG400023198 | EnsemblPlants:PGSC0003DMT400059678 | PFscan:PS51450 | PANTHER:PTHR44513 |
PANTHER:PTHR44513:SF1 | SMART:SM00364 | SMART:SM00365 | SMART:SM00369 | SUPFAM:SSF52058 | UniParc:UPI0002951908 |
RefSeq:XP_006367380.1 | RefSeq:XP_015160878.1 | SEG:seg | : | : | : |
Description
Leucine-rich repeat-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400023198]
Coordinates
chr00:-:21655393..21658596
Molecular Weight (calculated)
63207.3 Da
IEP (calculated)
6.801
GRAVY (calculated)
-0.308
Length
569 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSSAMSVDE IVEEMMRLNK SLPIRPGIDE VEAAKVLIMN MEKEEQMKLE TIARQNKRKD VPEEVFKILQ EMQRNLVYFQ SKEQKREALK LLDLENVHYL
101: FDELIQRASK CLSSNPQANN TSSASSRNSS NLSLANSSSF NGSSFNSPAT TTTMSSSSFY SEKEPVKVSE LVTRDDSYLK KPTTAFQMDG IGVGLRSGNA
201: SSAPQIVDTT LKRSTGQNGE KMSLIKLASL IEVSAKKGTK ELILRRKLSD QLEWIPDSLG KLSNLVTLDL SENRIAVLPT TSGGLSSLQK LDLHGNRIVE
301: LPDSIGDLLN LVYLDLNGNN LKTLPLTLAR LTHLEEVDLS SNMLSVLPEA VGSLVSLKKL IVETNDLEEL PHTIGQCTSL KELRADYNRL KALPEALGRM
401: GSLEILSVRY NNIRQLPTTM ASLTSLKELN VSFNELESVP ESLCFATTLV KLNISNNFAD LQSLPRSIGN LEMLEELDMS NNQIRILPDS FRMLSHLRVL
501: KTEGNPLEVP PGNIIEMGAQ AVVQHMADLV EKRDAKPQPV KQKKSWAQIC CFSRSNKRKR NGIDYVVQA
101: FDELIQRASK CLSSNPQANN TSSASSRNSS NLSLANSSSF NGSSFNSPAT TTTMSSSSFY SEKEPVKVSE LVTRDDSYLK KPTTAFQMDG IGVGLRSGNA
201: SSAPQIVDTT LKRSTGQNGE KMSLIKLASL IEVSAKKGTK ELILRRKLSD QLEWIPDSLG KLSNLVTLDL SENRIAVLPT TSGGLSSLQK LDLHGNRIVE
301: LPDSIGDLLN LVYLDLNGNN LKTLPLTLAR LTHLEEVDLS SNMLSVLPEA VGSLVSLKKL IVETNDLEEL PHTIGQCTSL KELRADYNRL KALPEALGRM
401: GSLEILSVRY NNIRQLPTTM ASLTSLKELN VSFNELESVP ESLCFATTLV KLNISNNFAD LQSLPRSIGN LEMLEELDMS NNQIRILPDS FRMLSHLRVL
501: KTEGNPLEVP PGNIIEMGAQ AVVQHMADLV EKRDAKPQPV KQKKSWAQIC CFSRSNKRKR NGIDYVVQA
001: MDLMQMDKRL DSTEQVVEEI MRIHRSLPAR PGIDEVEAAK GLIDNVEKED QACLEAIARQ RKSSEVPGEL FMVLQEMKKG YVQFRSKEQI REALKLLDLE
101: SVHSLFDDFI QRASNCIASP SSNGSVSSRP PLPPATTTAA RSDSQSSLNF SERAPVRPKD MVSRDDSFVT KSKPSSLYSD GFAAPPRRPQ ILDSTLTTGN
201: DGEKLSLIKL ASLIEVSAKK ATQEINLQNK LTEQLEWLPD SLGKLSSLTS LDLSENHIVV LPNTIGGLSS LTKLDLHSNR IGQLPESIGE LLNLVYLNLG
301: SNQLSSLPSA FSRLVRLEEL DLSCNNLPIL PESIGSLVSL KKLDVETNDI EEIPYSIGGC SSLIELRADY NKLKALPEAI GKITTLEILS VRYNNIRQLP
401: TTMSSLASLK ELDVSFNELE SVPESLCFAT TLVKLNIGNN FADMVSLPRS IGNLEMLEEL DISNNQIRVL PDSFKMLTKL RVFRAQENPL HIPPRDIAEK
501: GPQAVVQYMN DLVETRNAKS LMVKPKKSWV QMCFFSKSNK RKQSSMEIV
101: SVHSLFDDFI QRASNCIASP SSNGSVSSRP PLPPATTTAA RSDSQSSLNF SERAPVRPKD MVSRDDSFVT KSKPSSLYSD GFAAPPRRPQ ILDSTLTTGN
201: DGEKLSLIKL ASLIEVSAKK ATQEINLQNK LTEQLEWLPD SLGKLSSLTS LDLSENHIVV LPNTIGGLSS LTKLDLHSNR IGQLPESIGE LLNLVYLNLG
301: SNQLSSLPSA FSRLVRLEEL DLSCNNLPIL PESIGSLVSL KKLDVETNDI EEIPYSIGGC SSLIELRADY NKLKALPEAI GKITTLEILS VRYNNIRQLP
401: TTMSSLASLK ELDVSFNELE SVPESLCFAT TLVKLNIGNN FADMVSLPRS IGNLEMLEEL DISNNQIRVL PDSFKMLTKL RVFRAQENPL HIPPRDIAEK
501: GPQAVVQYMN DLVETRNAKS LMVKPKKSWV QMCFFSKSNK RKQSSMEIV
Arabidopsis Description
PIRL4Plant intracellular Ras-group-related LRR protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVW8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.