Skip to main content
crop-pal logo
Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 3
  • cytosol 1
  • extracellular 1
  • mitochondrion 1
PPI

Inferred distinct locusB in Crop

locusBlocations
PGSC0003DMT400044378

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G35470.1 PGSC0003DMT400044378 AT5G43400.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400035497 Potato cytosol 75.92 75.52
VIT_07s0031g02310.t01 Wine grape cytosol 65.38 66.79
KRH76512 Soybean nucleus 66.43 65.85
CDX72539 Canola nucleus 45.34 65.65
KRH28950 Soybean cytosol 65.2 65.43
KRH39397 Soybean nucleus 63.27 65.34
KRH07815 Soybean cytosol 62.92 65.33
GSMUA_Achr5P23850_001 Banana cytosol 62.74 64.79
GSMUA_Achr8P25490_001 Banana nucleus 62.57 64.38
AT4G35470.1 Thale cress nucleus 61.69 63.93
CDY66405 Canola cytosol 55.54 63.2
Bra024514.1-P Field mustard cytosol 55.36 63.0
CDY07843 Canola nucleus 55.01 62.6
CDX75505 Canola cytosol 58.88 62.04
CDY30364 Canola cytosol 55.36 61.64
AT2G17440.1 Thale cress cytosol 56.94 61.6
Bra037271.1-P Field mustard cytosol 55.71 61.55
CDX69142 Canola cytosol 58.35 61.03
CDY26809 Canola nucleus 56.94 60.67
CDY40632 Canola nucleus 57.47 60.0
Bra017712.1-P Field mustard nucleus 57.29 59.82
Bra011617.1-P Field mustard cytosol 47.8 59.52
TraesCS7B01G143600.3 Wheat nucleus 52.9 53.09
EES14257 Sorghum nucleus 53.6 52.77
TraesCS7D01G246700.1 Wheat nucleus 52.2 52.11
Zm00001d031470_P001 Maize plasma membrane 52.72 51.99
TraesCS7A01G247900.2 Wheat cytosol 52.02 51.93
Os08t0511700-00 Rice plasma membrane 51.32 50.87
PGSC0003DMT400052889 Potato cytosol 36.03 48.01
PGSC0003DMT400013776 Potato cytosol 12.13 30.4
PGSC0003DMT400016538 Potato mitochondrion 18.98 29.75
PGSC0003DMT400063105 Potato cytosol 13.18 28.63
GSMUA_Achr6P03430_001 Banana nucleus 21.09 25.42
PGSC0003DMT400046655 Potato cytosol 23.2 25.1
PGSC0003DMT400052945 Potato nucleus 13.71 20.74
Protein Annotations
EntrezGene:102591117Gene3D:3.80.10.10MapMan:35.1GO:GO:0003674GO:GO:0005488GO:GO:0005515
InterPro:IPR001611InterPro:IPR032675InterPro:LRR_dom_sfInterPro:Leu-rich_rptInterPro:Leu-rich_rpt_typical-subtypUniProt:M1C4K7
PFAM:PF13855EnsemblPlantsGene:PGSC0003DMG400023198PGSC:PGSC0003DMG400023198EnsemblPlants:PGSC0003DMT400059678PFscan:PS51450PANTHER:PTHR44513
PANTHER:PTHR44513:SF1SMART:SM00364SMART:SM00365SMART:SM00369SUPFAM:SSF52058UniParc:UPI0002951908
RefSeq:XP_006367380.1RefSeq:XP_015160878.1SEG:seg:::
Description
Leucine-rich repeat-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400023198]
Coordinates
chr00:-:21655393..21658596
Molecular Weight (calculated)
63207.3 Da
IEP (calculated)
6.801
GRAVY (calculated)
-0.308
Length
569 amino acids
Sequence
(BLAST)
001: MGSSAMSVDE IVEEMMRLNK SLPIRPGIDE VEAAKVLIMN MEKEEQMKLE TIARQNKRKD VPEEVFKILQ EMQRNLVYFQ SKEQKREALK LLDLENVHYL
101: FDELIQRASK CLSSNPQANN TSSASSRNSS NLSLANSSSF NGSSFNSPAT TTTMSSSSFY SEKEPVKVSE LVTRDDSYLK KPTTAFQMDG IGVGLRSGNA
201: SSAPQIVDTT LKRSTGQNGE KMSLIKLASL IEVSAKKGTK ELILRRKLSD QLEWIPDSLG KLSNLVTLDL SENRIAVLPT TSGGLSSLQK LDLHGNRIVE
301: LPDSIGDLLN LVYLDLNGNN LKTLPLTLAR LTHLEEVDLS SNMLSVLPEA VGSLVSLKKL IVETNDLEEL PHTIGQCTSL KELRADYNRL KALPEALGRM
401: GSLEILSVRY NNIRQLPTTM ASLTSLKELN VSFNELESVP ESLCFATTLV KLNISNNFAD LQSLPRSIGN LEMLEELDMS NNQIRILPDS FRMLSHLRVL
501: KTEGNPLEVP PGNIIEMGAQ AVVQHMADLV EKRDAKPQPV KQKKSWAQIC CFSRSNKRKR NGIDYVVQA
Best Arabidopsis Sequence Match ( AT4G35470.1 )
(BLAST)
001: MDLMQMDKRL DSTEQVVEEI MRIHRSLPAR PGIDEVEAAK GLIDNVEKED QACLEAIARQ RKSSEVPGEL FMVLQEMKKG YVQFRSKEQI REALKLLDLE
101: SVHSLFDDFI QRASNCIASP SSNGSVSSRP PLPPATTTAA RSDSQSSLNF SERAPVRPKD MVSRDDSFVT KSKPSSLYSD GFAAPPRRPQ ILDSTLTTGN
201: DGEKLSLIKL ASLIEVSAKK ATQEINLQNK LTEQLEWLPD SLGKLSSLTS LDLSENHIVV LPNTIGGLSS LTKLDLHSNR IGQLPESIGE LLNLVYLNLG
301: SNQLSSLPSA FSRLVRLEEL DLSCNNLPIL PESIGSLVSL KKLDVETNDI EEIPYSIGGC SSLIELRADY NKLKALPEAI GKITTLEILS VRYNNIRQLP
401: TTMSSLASLK ELDVSFNELE SVPESLCFAT TLVKLNIGNN FADMVSLPRS IGNLEMLEEL DISNNQIRVL PDSFKMLTKL RVFRAQENPL HIPPRDIAEK
501: GPQAVVQYMN DLVETRNAKS LMVKPKKSWV QMCFFSKSNK RKQSSMEIV
Arabidopsis Description
PIRL4Plant intracellular Ras-group-related LRR protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVW8]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.