Factsheet for PGSC0003DMT400016538

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 3
cytosol 1
extracellular 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, extracellular, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	extracellular
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

mitochondrion: 24351685

msms PMID: 24351685 doi

F Salvato, JF Havelund, M Chen, RS Rao, A Rogowska-Wrzesinska, ON Jensen, DR Gang, JJ Thelen, IM Møller

Department of Biochemistry and Interdisciplinary Plant Group, University of Missouri, Columbia, Missouri 65211.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g017480.1.1	Tomato	cytosol	96.14	95.88
VIT_11s0052g00390.t01	Wine grape	cytosol	61.16	72.08
KRH02753	Soybean	cytosol	66.94	67.5
GSMUA_Achr1P23570_001	Banana	nucleus	57.58	60.93
GSMUA_AchrUn_...	Banana	nucleus	56.75	60.59
CDY30187	Canola	nucleus	46.28	60.22
AT2G19330.1	Thale cress	nucleus, plastid	61.98	59.21
KRH37361	Soybean	cytosol	57.58	58.87
KRH12356	Soybean	cytosol	58.4	58.4
Bra024119.1-P	Field mustard	cytosol	58.68	58.2
CDX82667	Canola	nucleus, plastid	60.88	57.55
Bra038857.1-P	Field mustard	nucleus, plastid	60.88	57.55
CDY39144	Canola	nucleus, plastid	60.88	57.55
CDY46713	Canola	nucleus	57.58	57.1
Zm00001d002399_P001	Maize	nucleus	39.12	56.57
AT4G29880.1	Thale cress	nucleus	58.13	56.57
Os04t0605300-01	Rice	nucleus	54.82	56.53
AT4G26050.1	Thale cress	cytosol	59.23	56.14
Bra013944.1-P	Field mustard	cytosol, plastid	60.33	55.03
CDX89369	Canola	cytosol, plastid	60.33	55.03
CDY42760	Canola	cytosol, plastid	59.78	54.94
Bra019126.1-P	Field mustard	cytosol, plastid	59.78	54.94
Zm00001d002402_P001	Maize	cytosol, nucleus, plastid	54.55	54.55
KXG27059	Sorghum	cytosol, nucleus, plastid	54.55	54.55
CDX94383	Canola	cytosol	59.78	54.52
CDX92748	Canola	cytosol, plasma membrane, plastid	54.82	53.21
TraesCS2A01G432800.1	Wheat	cytosol, nucleus, plastid	52.07	51.78
TraesCS2D01G430800.1	Wheat	cytosol, nucleus, plastid	51.52	51.66
TraesCS2B01G454100.1	Wheat	cytosol, nucleus, plastid	51.24	51.38
HORVU2Hr1G101090.6	Barley	plastid	52.62	45.26
PGSC0003DMT400013776	Potato	cytosol	15.7	25.11
PGSC0003DMT400046655	Potato	cytosol	34.16	23.57
PGSC0003DMT400052889	Potato	cytosol	24.79	21.08
PGSC0003DMT400063105	Potato	cytosol	14.88	20.61
PGSC0003DMT400035497	Potato	cytosol	30.58	19.41
PGSC0003DMT400059678	Potato	nucleus	29.75	18.98
PGSC0003DMT400052945	Potato	nucleus	16.25	15.69

Protein Annotations

EnsemblPlants:PGSC0003DMT400016538	EnsemblPlantsGene:PGSC0003DMG400006458	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001611	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_typical-subtyp	PANTHER:PTHR44997
PFAM:PF13855	PFscan:PS51450	PGSC:PGSC0003DMG400006458	SEG:seg	SMART:SM00364	SMART:SM00369
SUPFAM:SSF52058	UniParc:UPI0002966D26	UniProt:M1A7T8	MapMan:35.1	:	:

Description

Leucine rich repeat protein [Source:PGSC_GENE;Acc:PGSC0003DMG400006458]

Coordinates

chr12:+:11259744..11265390

Molecular Weight (calculated)

40987.8 Da

IEP (calculated)

9.191

GRAVY (calculated)

-0.345

Length

363 amino acids

Sequence
(BLAST)

001: MRMELVEPRR QQQRQEEKGA FERKSSRGKS TRRKMTISIV EEEEEESPKI VDLSGMSLDS LPVNPTINLG AISKLHISNN NLQSIPESLT ARLLNLVELD
101: MHSNQLNSIP NSIGCLSKLK LLNISGNLLL SLPKTIENCR SLEELNANFN MLTHLPDTIG FELINLKKLC INSNKIAYLP YSTSHLTNLR VLDARLNCLR
201: SLPDDLENLI NLEILNVSQN FQYLSKLPYS VGFLISLHEL DVSYNKITEL PDSIGCLKKL QKLSVEGNRL VSPPPEVVEQ GIRAVKQYLC EKINGMHDKS
301: PKKKSWFGKL ARCSTFSGAN IPRDDREDFG VPSNRTIDVI ASPRFMGMLS PRRLLSPKTY FSK

Best Arabidopsis Sequence Match ( AT2G19330.1 )
(BLAST)

001: MICEEAYHQQ PQIQKEQMMT MDQRNNHQRK RSPLSSPSSP SSPSSPSSPK SPSFNNNEEE RLEVVNLSGM ALESLPNPSL NLAQICKLDL SNNHLQTIPE
101: SLTARLLNLI ALDVHSNQIK ALPNSIGCLS KLKTLNVSGN FLVSFPKSIQ HCRSLEELNA NFNKLIRLPD SIGFELTNLR KLSINSNKLI SLPISITHLT
201: SLRVLDARLN CLMILPDDLE NLINLEILNV SQNFQYLSAL PSSIGLLMNL IELDVSYNKI TVLPESIGCM RRLRKLSVEG NPLVSPPIEV MEQNLQVVRE
301: YLTQKMNGGS PRSPSKKKSW GFGKLVKYGT FNGGSRSWNR EEREGFIMPE YRSIDSLASP RYSGMFSPRR LFSPRTYFSR

Arabidopsis Description

PIRL6Plant intracellular Ras-group-related LRR protein 6 [Source:UniProtKB/Swiss-Prot;Acc:O64566]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.